kmt5c (LOC108280634)


Basic Information

Item Value
gene id kmt5c
gene name LOC108280634
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1353329 ~ 1361460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241205
CCGCTATCTCACTGCCTTCCTATTGGACAGCGGAGTCCAGATCGAGTCATGTGACCGCTATTCTTCAGAGACCAATGGAGCCAAAATCACAGCAACTAGAAACTGgTCGGTCGGAGAGCGGGTGGAGGTGCTGCAGGGCTGTATAGCTGAGCTGAGTCCCGCTGACAGCGCCGTGCTCAGGACCGGCGTGAACGATTTCAGCGTGATGTACTCGACACGTAAGCAGTGCGCTCAGCTCTGGCTCGGCCCGGCCGCCTTCATTAACCACGACTGCAGGCCGAACTGTAAGTTCGTGCCTGGGGATAAGAACGGAGCGTGCGTGAAGGTTGTCCGTCCCATCTCACCCGGGGAGGAGATCACCTGTTACTATGGCGACAGCTTTTTTGGGGAAGACAATGAGATGTGTGAATGTTGCACCTGTGAGAGGAGAGGAAAAGGGTTTTTCCGGCACAGGCTGGCCGCGCTGCAGGAGTGGGAACACTCGAACGATCCGCTAGGCCAGAAGTACAGATTCAGAGAGACGGATTTGCGGCTCAACCGGGAGAAAGGGAACAGCACTCCGAGTCCATTCCTCCCGGTATCTAACCCAGCCTGCTCTGTGAAGAATTCCCAGCAGACGAAGAGAAACGCCCCTACAGTGAGCAGCAGGACGACAAAGACCAAGAGGTGGAAAAGGGAGGAGCGGATCAAACAGGCTGAGAAGACGCAACACAACCACTTCATATCATCGCTGTCTCATTTCAACCTGAAGGACTCGAGCGTGTGCCTGTACAGTCACAGCGTGGACTTCCTCCTAAGCTGCAGGGATCCCGCCAGCAACGAACGAGCGCTTCTGTACACGATCGAGAGCGTGAGACCAAGATTGGAGAGTCGGGACTCGGACGTTCTTGGCCCTCCGTCTCCCGACGACGTCGGACTAATCAGAGGTGAGGAAGCACGAGACATCTCTAACGACGTATCGAGTAACACTGACGAATTGAACTTAAAACCCTTCACGTTAAGCTCGGTTTCGAGCGCCGGTCATAGAGACCCCGCAAACGCTAAAGGACAGGAGGCGGAAACCGCCGCCCCTGCCGCCGCCGTCAGAGTCGTACATCAGATGGCCATTTCTTCACGGACCAGGAATATGCTTCGCACCCGA
>XM_034310288.1
ATGTACCGCTATCTCACTGCCTTCCTATTGGACAGCGGAGTCCAGATCGAGTCATGTGACCGCTATTCTTCAGAGACCAATGGAGCCAAAATCACAGCAACTAGAAACTGgTCGGTCGGAGAGCGGGTGGAGGTGCTGCAGGGCTGTATAGCTGAGCTGAGTCCCGCTGACAGCGCCGTGCTCAGGACCGGCGTGAACGATTTCAGCGTGATGTACTCGACACGTAAGCAGTGCGCTCAGCTCTGGCTCGGCCCGGCCGCCTTCATTAACCACGACTGCAGGCCGAACTGTAAGTTCGTGCCTGGGGATAAGAACGGAGCGTGCGTGAAGGTTGTCCGTCCCATCTCACCCGGGGAGGAGATCACCTGTTACTATGGCGACAGCTTTTTTGGGGAAGACAATGAGATGTGTGAATGTTGCACCTGTGAGAGGAGAGGAAAAGGGTTTTTCCGGCACAGGCTGGCCGCGCTGCAGGAGTGGGAACACTCGAACGATCCGCTAGGCCAGAAGTACAGATTCAGAGAGACGGATTTGCGGCTCAACCGGGAGAAAGGGAACAGCACTCCGAGTCCATTCCTCCCGGTATCTAACCCAGCCTGCTCTGTGAAGAATTCCCAGCAGACGAAGAGAAACGCCCCTACAGTGAGCAGCAGGACGACAAAGACCAAGAGGTGGAAAAGGGAGGAGCGGATCAAACAGGCTGAGAAGACGCAACACAACCACTTCATATCATCGCTGTCTCATTTCAACCTGAAGGACTCGAGCGTGTGCCTGTACAGTCACAGCGTGGACTTCCTCCTAAGCTGCAGGGATCCCGCCAGCAACGAACGAGCGCTTCTGTACACGATCGAGAGCGTGAGACCAAGATTGGAGAGTCGGGACTCGGACGTTCTTGGCCCTCCGTCTCCCGACGACGTCGGACTAATCAGAGGTGAGGAAGCACGAGACATCTCTAACGACGTATCGAGTAACACTGACGAATTGAACTTAAAACCCTTCACGTTAAGCTCGGTTTCGAGCGCCGGTCATAGAGACCCCGCAAACGCTAAAGGACAGGAGGCGGAAACCGCCGCCCCTGCCGCCGCCGTCAGAGTCGTACATCAGATGGCCATTTCTTCACGGACCAGGAATATGCTTCGCACCCGACTCAGATGCTCTGGAGCTTTTGATCGAGGTAAACTCTCTCGTTTGAATAAAAAGGCGGTCAAAATGATACGCCGGACTTCTAAGCTGCGCGCAGGCGCTAGACCTCACGGCCGGTGTAGGAGAGGTGCTGTTAGAAAAGGCGGTCCGCGTAAACAAAGGTCACGCTTCAACAAAACCCGACGAGAAACAAACAGCAAGTCATCTCCAGCGATCACAGAGGAGAAGCAGCAGGGCAGCTTTGGGGATTCTCACAAGGCCACGGCTGACGGCGAGGAGCGCATCACTGTCTCCGGCGCTGCTAGGGAAGGGGATTCGAGCTCCCCAAATGCTTCAGGGATCTCCGGGGAGCTGCAGAAAAAACACATCCCTTCTGTCGTTTCTGGCACGATCAATGTTACCACATCCTCGACTCCTTTTTCCTCCGCTCACTCGCCACTTCCActacctcctcctcctcctcctcctcctttagcttcttcatcttcttcatcctcttctCTTCCTTCAGGGTTGAAGCGTTACGTAAAAGTCAGTCTGGTCAGAGTGTCGATCCCAGGAGAGCGAGCAGCTGTTAAGGCAGATCAGGAAAGAGCAGACAGCGGAGAAAACGCACATCCTACATCTCCGGCAGCTGTAGAGAAGCAGATCTCGAAGTGCAAACGAAGCAAAGGTATCTCGAGACTCGGTGTTAAGAAAGGGGTGAGGGAGATGTACTTTACTCCGAGTGCAGACAGCTTTTTAAAGGTGACGTGTGACATAGAAAGTAGCGGGAATGCCGTAGCAAAACCTGTTGCACAGCTGACACATAAGGGTAGCAAGAGAAATAACGAAGAAATAGAGGAAATAGAGACGATGAAAGaaaataacagtaacaataagAGAGACAATATGGCTTCTGATTCTGTATGTGTTGAGAAATCTTTGTTAGAGAACAGCGAAGTAGTGACTCATTTAAGGAAAAGAGGACAAGTGCCAAAAGGTCAAACAAAACAGAGTGAAACAAATATAGCTGAAGAAAAGGATGAGGAAAAGCGTAAAGGTGACGTAACTAAGCAAAATGAAGATACTGTACAAAAGAAATCAGATTTGTTGCGTTTTGGAAGCAAAACTATCGTCATAAAAGAGGCAAAAGTCCTTCTgtctgatattttaaaaagcttgaGCAGTGAATTGGTTAGTCAAGGGCTGGACGGTAAAGCGTATCACAGCGTAGTCAGGAATTCTTCGCGACACGGTGAGTCAGAATCGATTAAAAGGTTGATATCCCTTACTAACATCCCAAAAGTGAATTTTGAGCCTCTGAAAAAGAGCCCCGCGATTGCGAGAGTAACCCACGTGGCTCAGCGTAGCGCACAGATTTCACAAGACCATCATGGCGCaaaagtggcaaaaaaaaaagatccagaaATTATTCCAATGTCCTCCGAGTCTCTCTCCCCTCTAAAAGGCAGCCTGGATCACAATTCCCAGAGCAGCATCCCGCTAAAGAAACGCGTCTTTCGAGAATCCCTCGAAACCGATCCAGATCAAGACGCAAGCGTGACTACAACTACAACGGAGTCTCCGTGTCCCAGTAAAAGTCTGGAGGCCAGAACGGAAAGTCTGTTACCCGCGTCTCAAGGGAGCGAGACCTTTGATAACGGAGCTCAGAACTTAACTTTACAGTCGAGCTCTTCTTTCAGAGATGAAGGAGTAGGATCAAAAAAGGGCAGGCTGTGTAAATCCTTAGTGGCTAAAAAGCTACGACAAAGAAAATGTTTTCGAACTGCTCAGGCTAGACCTGGAGCTCCAAATAGGATGTTCAGAGAAAGAGGTAGTACAGGTAACGCATTGGCAGCGAAGACACCTGAAATTAGAGTAAATATGaatagaaaatgcaaaatgaaatcTGAGCTAGGAGCCAGAGTGGAGCGAATCGATGCAGGGAGAAAAATAAACGAGGACGTAAGAGAGGCTGGACAAAATTTAGCAATGGAGACGCAGAAAAACGCAAAAGCCGAAGCGGACGCCTTGTCCGCTTCGGAATCTTCATTTAACACGGAAGATGAGCAGAATATAAATTTTAGAATACGTCTGAAAAGGAAGAGGGGGAAGGAGTGGGAAATGGAGAGTGAAATCAAGGGGGAAAGTGCTGTGGTTGAAACACAGAGTTCGGAAACACGCTCCGATGTCATTGACCCCTTTAAAGCTATTTTGGATTCTGTCGCGATCTTAAACTTGGAAATGGAGCGGATTCGAGGCCACGGCGAAGCGGACAAGAGCGTCGGCCTGGAGCAAGCCACTAAAGCTGTTCAAGACGTCTTAGAACATTGCCAAAAAGAAAGTACTTTCAAATCCAGGAAAAGGCGTAAAAAGATATCTGGTGCTAGCATCAACAGCGAAAAGCATGCTAAAGGACAAGAAGTCTCTGTTCATAGTAAAATGGAGTTTCCTGAGGTGCTAGAACAACAGAGTCAGTTTGTAAGACATCTCAAAGTTGAAGCTGATAATATGGACATCAAACCGTTGCCTCTGCTTCGGTTGCGACGCCGGGCCGAGGGCAGATGGGAGGTGGACGGCGAGGAAGCTCACGCACAAGACGGAAACACGGGACCGGGAAATTCTGTGCTAAGGGACTCCCGGATTCTGTCCTGCTTTTTTCCTGAGAGGATGCCGACGGGAGAGATGGCGTTCAGCAGAGTCAAAGAGGAAAACCTGTCTCCGTGCCAGCACCGGACTGCAGCTAGCAAGTGCGACAGGATTAGAGAGCTCTCTAAAGGTGCGGTCACTTCAGAGCCTTCGCTACTGTCCCTTTCACCCTTATCTCTGAACTCTCCGTATCACGAAGGACTAACGGAAATATCCCATCTCGCAAGAGTCAAAGAAACGTTTGTGCCAGAAAGAGTCGAGAATCTGGAGAGCGCGGAGTTGGGCGAGGTTTGCTTAAGTCACAACTTGCTTCAGATCAACAAAAGCCTCTCGAAACTTCAAGCCATGAGCCAACAGCAGCCATCATGTGCACCTGTTAACATCAGTGCGACTACCTCCTGTCAGATTCAGTCGAAACCGTtgtctcctccctcctccccttTCACCACTGAATGCACCTTTTCAAACTATTCAGAAGACATTTTAGATTTTCACTGCTTGAACCTCGACGGCTACGATCAAACGCACGCACAAAGCGGCCTCCAAAATACACTGACGGACTACTGCTCCGGCGAACCTCATAACACCGGATCTTTTAGTAGCCCCTTCTCTCAAAGCCCAGCGGACGGATGGAACCCAGAGACCCCTTACCTCGGCTCTCCGAGCCCGGGGAGTAGCTTTAGTACTCCAGAAGACTTGAGTTTTCCCGATCTTGGGCTTACGCGATACGACACGCCATCGTTAAACAGCGAGTTCTCTTCCAAAGACAAAGCATTCTGTCCCGTGACGATGGGTTCGGCCGCCGTCAGAGATTCGGAAAGGAACGTGTTTTTTTCTGATAGTACGTCGACAAAGCGCAACGTGATCTTTCAGTCCAGGGAAGATTCTGCGACGCCCCTGATTTGTGTGGCAGATAAAACATTAGGCAACCAGAGAGacttaataatatttaacacatcCTTAAACGCTAAGCAGACCGTCCCTTCTGCGGCTTGCTCCCAGTCTCAGGATAAAATACATTTCCTTGACAGCTCAAGGAGTCTGTCGGCGCAGTCGGACTTTGCTAAAATTCAACCTAAGGACAAAAATAACGAGCCGCTCAACTTTGTTAGCTCGATTAATAAATCCCAGCCTTCCGTCTTGAGTCAGTCTGGGCCAGGTTTATACAATGCTGGATTACAGAGCAACCCTGTTAAACCCTTCCACTCGCTTCATACAGGAAGCAAAACCACCTCATGCTCGGAGTTACCAGGGCCTCTTAACCTTGGCAGTACGGTTTTCCGTGGCTATGAAAAGAAGCCTACGGTTTTCCAGAACTACAGCAGTTTGGTGAAAATTGAAGGAGGAGGATACGGTCAGAACGTTTGCAAAGGTTCTTCAGTAGGTGACTCTAAACTCTCTTTGAAACCTCACGGCAGCAAGTCTGAACTTCCCGACCCCGTTCCAGGGCCATCGAGTTTACGCAACCACAAGGATTTATCCTCCGAGTGTTCTCAGAGTGCATATATGAGATACTCTGAAACCTCAAGAAGAGATACAAAGACTGTTCCACCAAACAAAGGACTGTCTAAAGCACACCCGCAGAGCGATCGGGTTTACCCCGTTTACTTTCTCAGCTCTAGCAAAACCGCAGCAAACGCCATTAAGAGCATGCCTATCGAAAAGCCTCAGAACGTAAGGGTTGGGAGTTCCGTCAATCCTGACATTCCTTCTACATTTTTTCATAGCGCTCAGAGTCACAGCATACTTAACAGCAAAAACCTAAGACAGGATAAACCCCATGCCGTCGTAGCCCCAAGTCAGAGCTCTCAAGTCTCGGTTCCGCTTGACAGAAATCAGCTCTGTTTCTCACACTGTGATCCTTTAGACGTCTCCTTCAGCTCTTCGCTGTCCTCCGCCGTTTCCCAGCACAGCAGTCCGCAAGTGAGCTACAGAGATTCCGTCGGTCAGGAAGCTCCAGCGACCAAACCTCAGCCGTCCTCCTTCGTGTGCAATCAATCCGCTCACCCGTCTTACGTCGTGAACTTCACCGGTGATCACTCGGTCACGCTGAACTACAACGACGGCGGGGAATGTTTGAATTATTCTTCGTCGGTGCCCACGAATTACACTTACCATTGCCTCATGGAGCCTTCTGGAACCCAGGGGAGGCTTATCGTAGAACCGTGCGGTCCGTCGACCATCACGCATTCTCCTTCTATGGGCAGCTTCGCCGGCCCTAAAGGCATGGCGGAGACGAGCAAGGACTCTCAGCAGCACGGGCAGTCCGGATGCCATCCGGTCATTTCCCATCACTTCCCGTCGTCTCACTCGCAAAGCGCCTCTCTGACGGACCGCAAGCCCAAGAGACTGCGGCTGGTAGTTACTGACGGTACAGTAGATCTGGACCTGCAGTACACAGACTGACGGTTGCTAAATCGCTATTTATTAACGACAATGCAAATATGttgtttatatgtaaaaaaaaaaaaaaagaaaagacatacTTTTAAAAGTTGTGCTTAG

Function

NR:

description
PREDICTED: cadherin-related family member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241205 False 1141 TUCP 0.56 6 1353334 1356327
XM_034310288.1 True 6279 mRNA 0.50 6 1353329 1361460

Neighbor

gene id symbol gene type direction distance location
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding upstream 8292 1324100 ~ 1345037 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding upstream 87208 1253527 ~ 1266121 (+)
LOC113528076 NA coding upstream 243191 1078439 ~ 1110138 (+)
LOC113528077 NA coding upstream 310879 1037151 ~ 1042450 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding upstream 319114 1021926 ~ 1034215 (+)
shank1 shank1,LOC108427331,LOC107732841 coding downstream 40348 1401808 ~ 1494018 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding downstream 143418 1504878 ~ 1531986 (+)
med25 med25 coding downstream 269612 1631072 ~ 1658296 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding downstream 316852 1678312 ~ 1723798 (+)
emc10 emc10 coding downstream 454851 1816311 ~ 1826068 (+)
G203635 LOC108280870,LOC103034911 non-coding upstream 40340 1309397 ~ 1312989 (+)
G203385 NA non-coding upstream 242482 1110529 ~ 1110847 (+)
LOC117598762 NA non-coding upstream 274903 1061190 ~ 1078426 (+)
G203327 NA non-coding upstream 292808 1058679 ~ 1060521 (+)
G203357 NA non-coding upstream 468963 817391 ~ 884366 (+)
G203647 NA non-coding downstream 923 1362383 ~ 1441015 (+)
G203660 NA non-coding downstream 85529 1446989 ~ 1500793 (+)
G203662 NA non-coding downstream 160766 1522226 ~ 1533045 (+)
G203672 NA non-coding downstream 203896 1565356 ~ 1566629 (+)
G203867 NA non-coding downstream 411169 1772629 ~ 1867011 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 116127 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 296995 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 546984 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 579079 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 620439 726729 ~ 732890 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 200064 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 521592 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 555745 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 816223 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 1506308 2867768 ~ 2908043 (+)

Expression


Co-expression Network