G203965


Basic Information

Item Value
gene id G203965
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2198113 ~ 2198333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241577
gggggttcgaatcccgcctcaGCGCTCCGTgcatggagcttgcatgttctccctgtgctttggggtttCCAAAGACACGTGTTATAGGCTGATAGGCATCTCTGaactgtctgtagtgtgtgaatgtgtgtgaatgtgtgtgaatgggccCTGTGATGGGCTGCCACCCCGTCCACAgcgtcccctgccttgtgcacTGAGGTCCCCGCGATAAGCTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241577 True 221 lncRNA 0.57 1 2198113 2198333

Neighbor

gene id symbol gene type direction distance location
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 3087 2187365 ~ 2195026 (+)
grna NA coding upstream 23502 2130528 ~ 2174611 (+)
LOC117598829 NA coding upstream 42264 2155599 ~ 2155849 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 84044 2092559 ~ 2114069 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 106660 2084552 ~ 2091453 (+)
slc25a39 LOC108276595,LOC108434938 coding downstream 416 2198749 ~ 2212411 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 41276 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 423837 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 657063 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 709839 2908172 ~ 2917545 (+)
G203955 NA non-coding upstream 38830 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 189507 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 210898 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 275634 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 326553 1856423 ~ 1871560 (+)
G203973 NA non-coding downstream 26216 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 60149 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 190651 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 325655 2523988 ~ 2524878 (+)
G204316 NA non-coding downstream 342781 2541114 ~ 2541458 (+)
rundc1 rundc1 other upstream 11949 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 210198 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 308598 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 578139 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 836653 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 669435 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 805275 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 994371 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1335956 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1768400 3966733 ~ 3986284 (+)

Expression


Co-expression Network