G203996


Basic Information

Item Value
gene id G203996
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2388984 ~ 2392499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241612
GCCCAagcaagaaaacacacagagaaacacagaaaaacagaacaccTCGACCAAGAAAAGAACCGAGCCGGAgttggagctggagctggagctgaagCTGGAACCCGAACAGAGCTGGAACAGCAAGAGAACCTGCCTCAGAAGGTCCCAAGGCTGGCAACCTCGAACTTCGCCTGAATTAAGTTTTCTCCCAGCCGTTCAGACTCCAGCCTCCCTCTCCGGCGACGATCCATAACTCCTCTAACATCCTCCAACTCCGATCCGACTAGAACCTGCTGACCGACACCAACTCCTTCCACTCATCACCCAAGCAAACATGGCGAAGAGACTCATCACGCATCTGTTCCAAAGGGAAGTCCCCAGGTGGAATCCCCACGGATGTGGGTGGGGGGTGAAGCCCTCTTTCTTCTCAGAGTCATCATGACATGGCACAGACATTGACGGGCCAGGCCCTGCCTGCCTGCCAGAGCTGCCCACATCCCACTCCTAACAACGCAGCAGCAGGACCCATCCTCCCtcatgatttttacattttcctaaACCCCAGCCAATTTGTCCCCAAAATAAATGTGGCTGGTATTTCTTAATACTGGGCCACGCACACCTCACCTTTCCCATTGCCTCACCTTCAGTGGACTGAGGTctgattacattacatttatgccATTTTGTAGACACCCTTATCTAGAGactttatctcattttatagaactgagcagttgagggatGGCATAcaagctcatgcatgcagaataGGGCAGAGAGTGCTATGGGAGACAACATATATGGGAGTCCACCAAGTGTAAGGTGGTCAAAAAAGTGCAgatgattgatttttttaaaaaaaatcatacacacatgcaaagaGAAACTTTACATACCAACCAAGGTCAAACATTCATGTGATGAACTCAATTTACAATTGGTTAAAATAATagtcatttctgtatttttatcacaaataaatatttgcaaAGTAATTTGTATCAAACTCTTCAGTTTAACTTCAtaatctccaaaaaaaaaatctgatattcATAAGACTGAATATATGTTGCAGGAAGGTaagagaataaataaagtaaattggTAAAATACACTCAAAATTCGATGTTATTcacaaaatatgaaaagcaaCAGAAACccaactaaaaaataaataacaatgttaagaaaaaaaatagacaaaatgagTTTAACAACTgaaaaattatgacattttaaatctaaatctaatctcAAAATGTCAATAGACTCTACATGAATGTTTTGGAAGTTTAGGAGTggtatttgtccatatagtacacaataatagaatggatttatttataattgcactatccgttgtgcccagatgaggatgggttcccttttgagcctggttcctctcaaggtttcttcctcatatcatctcagggagtttttccttgccaccgtcgccctctggcttgctcattagggataaattcacaggaataaattcacatatttactatatatctttttttgtgaatcgatttatttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaataaaattgaattgaattgatataAGAATGAAAATCTAAATTTCAGGTGACCCTatcattattttctcatttctgcaTTTGTCATCAGTTTATGGAAAATAGTGATGTAGAATTTAAATCTTGATGCATTTCAATATTTAaggcaaaaatacaaaatgaaaaagtagGAAATTGTATTGAATCCCTAAACCATTTTAATGTCAAGTAGCAGTGAGATAAACGGGTAACAATAAACTagtaagaaaatgaaaataaaagttttgATATAGTAACATCTAAACAGActaaacagatgaaaacaaaCTGATTCTAAAATCTGTGTTATTTAAAACAactagaaaataataatatcttaaCAATGGAAGATTATCCAAATTAACCATGTTATTATTTGTGGACTGTAGATATTGGATAATTGTTTAGTTCTCAGCACTACTCTTCACAGTTTGCATAAATTTCTGCATCCTCATTGTCATTGTCCACATCACTTCTTTGTTCATGAGCATTGAAATCAGTTTGGTCGTTTTCAGAGTTGTCTGAATCGTCCTTCTGGGGGAAAatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241612 True 2135 lncRNA 0.38 2 2388984 2392499

Neighbor

gene id symbol gene type direction distance location
nbr1b LOC108276620,LOC108437991 coding upstream 130728 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 176573 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 193958 2187365 ~ 2195026 (+)
grna NA coding upstream 214373 2130528 ~ 2174611 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 229671 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 462897 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 515673 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 521759 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding downstream 526375 2918874 ~ 2936656 (+)
G203967 NA non-coding upstream 128610 2258482 ~ 2260374 (+)
G203973 NA non-coding upstream 161820 2224549 ~ 2227164 (+)
G203965 NA non-coding upstream 190651 2198113 ~ 2198333 (+)
G203955 NA non-coding upstream 229701 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 380378 2008401 ~ 2008606 (+)
LOC117598836 NA non-coding downstream 131489 2523988 ~ 2524878 (+)
G204316 NA non-coding downstream 148615 2541114 ~ 2541458 (+)
G204323 NA non-coding downstream 152490 2544989 ~ 2737286 (+)
G204330 NA non-coding downstream 226528 2619027 ~ 2627149 (+)
G204333 NA non-coding downstream 264077 2656576 ~ 2723809 (+)
rundc1 rundc1 other upstream 202820 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 401069 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 499469 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 769010 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 1027524 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 475269 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 611109 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 800205 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1141790 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1574234 3966733 ~ 3986284 (+)

Expression


Co-expression Network