kat8 (kat8,LOC107658503,LOC107554120,LOC107582998)


Basic Information

Item Value
gene id kat8
gene name kat8,LOC107658503,LOC107554120,LOC107582998
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 717617 ~ 726285 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309733.1
TGCGCATGCTCAGAGCTACTGGGCGCTGCGCAATGTTTTCAAATCGGCTCTAATGTCTAGAAGAGAGCGCAGTTCGTCCAGCAGACTTCTGACTAACGCCGTGAACACGCTGAACAACCGCGGGCGAGGAGAGCGAATGGAGATGGAGATAGACCCCGGGCATCCCGCGAAAGACCGAGGAGACGTCGAGACGGCGAACCGAGCGACTTTTTCATCCAACGGCAGCGGCGCGGAGGAGGACGAGGCGGAGGCCGCGGATCGGCGCAGAGAAGCCGCGGGCTCGAGTAATCCGCGCGCCGGGGAAGGAGCGTCGCTGGGCGGCGGCAGGGAGCAGGAGGTGTCGGTGGAAATAGGAGAGACTTACCTCTGTCAGCGCGCAGATAAAACATGGCATTCAGCAGAAGTGATCCAGTCCAGGCTGAATGAGCAGGAGGGCAGGGAGGAGTTCTATGTGCATTATGTTGGATTTAACAGACGTCTGGACGAGTGGGTTGGAAAGGGTCGCCTGGCGCTGACCAAAACGGTGAAGGATGCGGTGAGGAAGAGTgtggaggagggaggaggagagctCGGGGACCAGCCGGAGAGGAAGATCACTCGCAACCAGAAACGCAAACACGACGAGATCAACCATGTTCAGAAGACGTACGCGGAGATGGACCCGACGACAGCAGCGCTGGAGAAGGAACACGAAGCGATCACCAAAGTGAAATACGTGGATAAGATCCAGATCGGGAACTTCGAGATCGATGCCTGGTACTTCTCTCCGTTCCCCGATGATTACGGGAAGCAGCCCAAGCTGTGGATCTGTGAATACTGTCTCAAGTACATGAAGTATGAGAAGACCTTCAGATATCACCTGACTCAGTGTCAGTGGCGGCAGCCTCCAGGGAAGGAAATTTACCGCAGGGGGAACATCTCAGTGTACGAGGTGGACGGACGAGACCATAAGATCTACTGTCAGAACCTGTGTCTGCTCGCTAAGCTGTTCCTCGATCACAAGACGCTTTACTTCGACGTGGAGCCCTTTATCTTCTACATCCTCACCGAGGTGAACAGACAGGGGGCGCACATCGTCGGCTACTTCTCCAAGGAGAAGGAGTCTCCGGATGGGAATAACGTAGCGTGCATCCTCACACTTCCTCCGTACCAGCGCAGAGGATACGGCAAATTTCTCATCGCGTTCAgttatgAGTTGTCTAAGTTAGAGAGTACGGTGGGTTCTCCAGAGAAGCCTCTGTCCGATCTGGGGAAGCTGAGCTACAGGAGCTACTGGTCTTGGGTTCTGCTGGAGATCCTGCGAGACTTCAGAGGAACATTGTCCATTAAAGATCTCAGCCAAATGACCAGCATCACacagagtgacatcatcagcacgCTGCAGTCGCTCAACATGGTCAAGTACTGGAAAGGTCAACACGTGATCTGCGTCACGCCCAAACTGGTGGAGGAACACCTGAAGAGCGCTCAGTACAAGAAACCTCCCATCACAGTGGACACGCTGTGTCTGAAATGGGCTCCACCTAAACACAAGCAGGGCAAGTTCTCCAAGAAATGAGGAACGTGAGGAGCATGAGGAACGTGAGGAGAGTGAGGAGCGTGAGGAGAGCAAGGAACGTGAGGAGAGCGAGGAACGTGAGGAGCATGAGGAACGTGAGGAGCATGAGGAACGTGAGGAGAGCGAGGAACGTGAGGGACGTGGAAACAGACGGACGCTGATAAATAAACTCACATTCTGTTGAAGTGTTAGTTAAAGAGGGACGCTGTAAGACTGTACATTgctttttcttaaataaatgaataaataactaaa

Function

symbol description
kat8 Predicted to enable histone acetyltransferase activity (H4-K16 specific); histone binding activity; and transcription coregulator activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of MSL complex. Orthologous to human KAT8 (lysine acetyltransferase 8).

NR:

description
histone acetyltransferase KAT8-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG:

id description
K11308 MYST1, MOF, KAT8; histone acetyltransferase MYST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309733.1 True 1813 mRNA 0.54 11 717617 726285

Neighbor

gene id symbol gene type direction distance location
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding upstream 12164 690189 ~ 705453 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding upstream 51270 653037 ~ 666347 (+)
bcl2l12 NA coding upstream 131161 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 154208 555289 ~ 563409 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding upstream 168252 543400 ~ 549365 (+)
hsd3b7 hsd3b7 coding downstream 85741 812026 ~ 849880 (+)
LOC113527857 itpripl2 coding downstream 138928 865213 ~ 882642 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding downstream 162976 889261 ~ 911910 (+)
smg1 smg1,LOC107729485 coding downstream 214735 941020 ~ 997685 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding downstream 273804 1000089 ~ 1014745 (+)
G203328 NA non-coding upstream 30987 679778 ~ 686630 (+)
G203303 NA non-coding upstream 86035 631290 ~ 631582 (+)
G203296 NA non-coding upstream 92997 623115 ~ 624620 (+)
G203278 NA non-coding upstream 105062 610704 ~ 612555 (+)
G203281 LOC108261056,LOC108428278 non-coding upstream 118894 595178 ~ 598723 (+)
G203321 NA non-coding downstream 12054 738339 ~ 738727 (+)
G203339 NA non-coding downstream 15547 741832 ~ 743740 (+)
G203357 NA non-coding downstream 91106 817391 ~ 884366 (+)
G203327 NA non-coding downstream 332394 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 334905 1061190 ~ 1078426 (+)
rnf25 rnf25 other upstream 598 707738 ~ 717019 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other upstream 65367 649444 ~ 652250 (+)
LOC117598976 NA other upstream 187993 523113 ~ 529624 (+)
LOC113525016 NA other upstream 349762 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 358263 266880 ~ 359354 (+)
si:dkey-16l2.17 LOC108280473 other downstream 444 726729 ~ 732890 (+)
fus fus,LOC107658502,LOC107729526 other downstream 26782 753067 ~ 774250 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other downstream 52555 778840 ~ 806345 (+)
armc5 armc5 other downstream 308051 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 494209 1220494 ~ 1237202 (+)

Expression


Co-expression Network