G115720


Basic Information

Item Value
gene id G115720
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15662088 ~ 15662437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU136566
AGCTGTTTAATCTGaagcaataaaaacaagaagACATATTCAGACAAGGGATAATTGTCCACTTATGATTTATCGAAACACTATAATCATACAACTCGATTCATCCAGTGATGCCATACAGGAGCTTCTCAGTGTAATATGCCAATGATATACAAATCTTGGAGTTACTAGGATAATGTAATTATGACACTTCTGTGCTTTTATACTGTTCAGTTTCTGAAAATATTGTTCATTTGCATGAACCCTCCAACTGCAACAAAACAGGATAAACCATCtttaacatttttgtaattttgtccaAGGCTCGATTAAATCTGCAGGAATAAATCCATGCCTAAGTTGGGTTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136566 True 350 lncRNA 0.34 1 15662088 15662437

Neighbor

gene id symbol gene type direction distance location
c1galt1c1 c1galt1c1 coding upstream 7867 15650949 ~ 15654221 (+)
sash3 sash3 coding upstream 43682 15610314 ~ 15618406 (+)
xpnpep2 xpnpep2,LOC107550741 coding upstream 54026 15590964 ~ 15608062 (+)
vimr2 LOC108269007 coding upstream 165048 15485452 ~ 15497040 (+)
ocrl ocrl coding upstream 179158 15454836 ~ 15482930 (+)
lamp2 lamp2 coding downstream 13075 15675512 ~ 15682412 (+)
tmem255a tmem255a,LOC107658139,LOC107550764,LOC107664343,LOC107752010,LOC107560273,LOC107744541 coding downstream 31987 15694424 ~ 15714219 (+)
nkap nkap,LOC106514663 coding downstream 60022 15722459 ~ 15726709 (+)
upf3b upf3b,LOC107752006,LOC107658129,LOC107664360 coding downstream 67016 15729453 ~ 15734837 (+)
stard14 LOC108268887,LOC108427814 coding downstream 122403 15784840 ~ 15789779 (+)
G115719 NA non-coding upstream 495 15661393 ~ 15661593 (+)
LOC117597624 NA non-coding upstream 284417 15375967 ~ 15377671 (+)
G115424 NA non-coding upstream 528651 15133177 ~ 15133437 (+)
G115270 NA non-coding upstream 582581 15078702 ~ 15079507 (+)
G115277 LOC108268465,LOC108427847,LOC106604410,LOC107568688,LOC107752032,LOC103036102,LOC107664333 non-coding upstream 591625 15069829 ~ 15070463 (+)
G115728 NA non-coding downstream 12192 15674629 ~ 15674861 (+)
G115731 atp1b4,LOC107658137,LOC107744544,LOC107550763,LOC107752012,LOC107664337 non-coding downstream 25455 15687892 ~ 15689452 (+)
G115774 NA non-coding downstream 83446 15745883 ~ 15746615 (+)
G115778 NA non-coding downstream 85552 15747989 ~ 15748285 (+)
G115779 NA non-coding downstream 87848 15750285 ~ 15750502 (+)
syce3 syce3 other upstream 606598 15054084 ~ 15055490 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other upstream 608731 15051315 ~ 15053357 (+)
ablim3 ablim3,LOC108427857 other upstream 649704 14942349 ~ 15012384 (+)
bcorl1 bcorl1 other upstream 1149686 14474957 ~ 14512402 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other upstream 1416894 14233718 ~ 14245194 (+)
rpl39 NA other downstream 79944 15742381 ~ 15744657 (+)
LOC113529420 NA other downstream 80731 15743168 ~ 15743297 (+)
sept6 sept6,LOC107664349,LOC107752004,LOC106611514,LOC107658130 other downstream 88354 15750791 ~ 15773203 (+)
rab41 rab41,LOC106604734,LOC107560298 other downstream 113999 15776436 ~ 15784429 (+)
sox3 sox3,LOC105029621,LOC107102653 other downstream 511022 16173459 ~ 16175845 (+)

Expression


Co-expression Network