c1galt1c1 (c1galt1c1)


Basic Information

Item Value
gene id c1galt1c1
gene name c1galt1c1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15650949 ~ 15654221 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917368.2
CACGAGTGAGCTGTCATCTCCTTTTCTACATCCGGCTGCACTGGATCACGGATCTAGAGCCAGATAATGTCTGCAGTTTAAGCTGTTCCTAAGGAGACCAATGAAATAAACTGTTATCAAAACTCAGGAAATCATTCAGTTGTGCGTTTAGCTTTCCGGCTAACTGGGCGGCAACTTGAGAGAGTATCATCTGGTAAAATGTTGTCGGAAGGCAGTTCGTTTTTCAAGGGCATGGTCCTGGGAGGAGTCTTCTGTTTGGTATTGTCACTTTTTGGAACCTTCAGTCCAACAATTCCCTTTCACCCAGAAGAACACCATGACCACCACCATCTCAAACCCATCGGCAAAGACGAGATGCAAAAGTTAAGCGAAGCTCAGGTGTCTGAACTCACCAAGCGGGTGCGAGTGTATTGTATCATTATGGTGACACCTAAGGATTTAATGTACTGGGTCACTGCCAACAACACTTGGAGCAAACACTGCGATAAGTCTGTTTTCTACACCTCTGAATCAGCCAAAGTAGTAGAGGCTGTTGATCTGCAGGAAAAGGACGAGTGGGTTAGAATGCGTAAAGCAATCAAGCATGCATATGAGCATGCAGGTGGCCTCCACTGGTTCTTCATCGCCCGGCCTACGACTTTCGCCATCATTGAGAACCTTAAATATCTGGTTCTGGTTAAGGATCCCAGTCAGCCCTTTTACATTGGCCATGTGGAAAAGTCTGGTGAGCTGGAGTACGTGGAGTATGACAGTGGCATTGTGCTTAGCTATGAGGCCATGAAGAGACTCATTGAAAGGTTTAATGATGAGAATAATTGCCCTGAGCATGGTAATAGCTTGTGGAAGGTGAAGGAAGAGAAGCAGCTTGCTATATGCCTGAAGTTCAGCGGTGTGTTCGCTGAAAATGGAGAAGATATTCATGGCAAGGGGCTCTTTAACAAAAAGAGTGTGAACACACTCATTTCTGAAAGTATAAGCCAGAACACAGACGATGTTGTGGAGACATGTTGCTCTGACATGGCCATCACATATGGTGGCATGTCCCCCAGCCAGATGCAGGTCATGATGTACGGAGTTTATAGGCTGAGGGCGTATGGACACAACTTTCATGATTCCTTGCTGTTTTTACCTCCAAAGGACTCAGACAATGACTAATCACTAACACTGTCCCTACTGATGTACCAAAAATGTTGTATAAGTTGTTGACAATGTTGACAGTGCTAAAGCTCACATTGCCAGAGGATCAATGCACCACTGTAAACTGTTAGTTTAAAGAAATGTGGTAAAGGAATTTTTGtcaaataaagtttaataatgCTCTTAGTTAGCATTATTCAACTTTGTTATGGCTCCGAGAGAGTGCTGAACATGCTGGAATGTACAGTCTAACATTTAGAATCCAATGTATTTAggacacatttttctttctcaactTAACCTGGTGAaatgtttcttcttttcctctttgaCAAATTTTGGGGGAATTTTTTAATCCACTGATATGCTCTGGACACACTGCatcactgaccaggataaagcggttactgaaaatgaatgaatattttaaaaagtatttttatagCCAGAGATAGGAAATGAATCTGCACACAAGATCAGAAACCCAAAGACATGTTACAGCATATCTTGGGCTCATATACTTGAGCACCTAGAAATAATCTTTATAACTGTGTTATTTCTAAattgtttacattaatattgtacagtaaataatagtgggtgaatgaatgaatgaatgaatgaatattaatgaatattaattaatactatTGTCTTAATGAAGTACTGTTTATGGTAATGATTAACCTGACTTCATTGTTCCTGCATTGGTTACATTCATAGGACCATCAGAATCAGaaatctttttaatcttttttttttttttttttaagttttaaaagattaaatgctgttttagcAGTGCTGAACCAGGCTGTAATGAAGGGTATTACTTTgtaattatgtttttgtttttatgtgacTGTAGTTTGGCAGAGGTTTATTCTATATGTGGGTAAAGAGATGTGAATTCATGGggtatttgtttcttttcaaaACTAGATTAATTTGTTCATTGCTTTATGATTATCAGTGAAAACTGCTGATTAGTTTAAAGTTGTGGGTATTGGatattgattaaaataaaactttcacaTTCTCATACTTA

Function

symbol description
c1galt1c1 Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Human ortholog(s) of this gene implicated in Tn polyagglutination syndrome. Orthologous to several human genes including C1GALT1C1 (C1GALT1 specific chaperone 1).

NR:

description
PREDICTED: C1GALT1-specific chaperone 1

GO: NA

KEGG:

id description
K09653 C1GALT2, C1GALT1C1; C1GALT1-specific chaperone 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917368.2 True 2185 mRNA 0.39 2 15650949 15654221

Neighbor

gene id symbol gene type direction distance location
sash3 sash3 coding upstream 32543 15610314 ~ 15618406 (+)
xpnpep2 xpnpep2,LOC107550741 coding upstream 42887 15590964 ~ 15608062 (+)
vimr2 LOC108269007 coding upstream 153909 15485452 ~ 15497040 (+)
ocrl ocrl coding upstream 168019 15454836 ~ 15482930 (+)
si:ch73-335m24.2 LOC108269004,LOC108427836 coding upstream 208015 15434374 ~ 15442934 (+)
lamp2 lamp2 coding downstream 21291 15675512 ~ 15682412 (+)
tmem255a tmem255a,LOC107658139,LOC107550764,LOC107664343,LOC107752010,LOC107560273,LOC107744541 coding downstream 40203 15694424 ~ 15714219 (+)
nkap nkap,LOC106514663 coding downstream 68238 15722459 ~ 15726709 (+)
upf3b upf3b,LOC107752006,LOC107658129,LOC107664360 coding downstream 75232 15729453 ~ 15734837 (+)
stard14 LOC108268887,LOC108427814 coding downstream 130619 15784840 ~ 15789779 (+)
LOC117597624 NA non-coding upstream 273278 15375967 ~ 15377671 (+)
G115424 NA non-coding upstream 517512 15133177 ~ 15133437 (+)
G115270 NA non-coding upstream 571442 15078702 ~ 15079507 (+)
G115277 LOC108268465,LOC108427847,LOC106604410,LOC107568688,LOC107752032,LOC103036102,LOC107664333 non-coding upstream 580486 15069829 ~ 15070463 (+)
G115220 NA non-coding upstream 726082 14922309 ~ 14924867 (+)
G115719 NA non-coding downstream 7172 15661393 ~ 15661593 (+)
G115720 NA non-coding downstream 7867 15662088 ~ 15662437 (+)
G115728 NA non-coding downstream 20408 15674629 ~ 15674861 (+)
G115731 atp1b4,LOC107658137,LOC107744544,LOC107550763,LOC107752012,LOC107664337 non-coding downstream 33671 15687892 ~ 15689452 (+)
G115774 NA non-coding downstream 91662 15745883 ~ 15746615 (+)
syce3 syce3 other upstream 595459 15054084 ~ 15055490 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other upstream 597592 15051315 ~ 15053357 (+)
ablim3 ablim3,LOC108427857 other upstream 638565 14942349 ~ 15012384 (+)
bcorl1 bcorl1 other upstream 1138547 14474957 ~ 14512402 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other upstream 1405755 14233718 ~ 14245194 (+)
rpl39 NA other downstream 88160 15742381 ~ 15744657 (+)
LOC113529420 NA other downstream 88947 15743168 ~ 15743297 (+)
sept6 sept6,LOC107664349,LOC107752004,LOC106611514,LOC107658130 other downstream 96570 15750791 ~ 15773203 (+)
rab41 rab41,LOC106604734,LOC107560298 other downstream 122215 15776436 ~ 15784429 (+)
sox3 sox3,LOC105029621,LOC107102653 other downstream 519238 16173459 ~ 16175845 (+)

Expression


Co-expression Network