LOC117597624


Basic Information

Item Value
gene id LOC117597624
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15375967 ~ 15377671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578388.1
ATTTGATTGGTTGCTTGTGGTGGGAATTTGATGCTACTTCAGAAAGTTAGGAGCATAATTTTCACTTGCCTCACTGCACCTGGACGTGACAGACTGAAAAGAAAGATGGATAAACTGAGCTGCAACTCTGAAGACCATGAGGGCATGGACAAAGACGAAAAAGACATCTTAGATAAGCAaatgtttgatgatgatgatgatgatgatgatgcagaggAGGTGatggaagaggaggaaaaagatgAGGAGAGTGACCTGACATTGTCTTCGGTTCAGTAAATATGTATTGCAGGCTGCACACTTGGGTTCATGGTCATGAGGTGATGACTTTGCTATTGGTAGACTACCAATCAAGGAAATGAACAGGAGGAAATACTCCACTAGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578388.1 True 388 lncRNA 0.42 3 15375967 15377671

Neighbor

gene id symbol gene type direction distance location
cyfip2 cyfip2,LOC105931286,LOC108427840,LOC107550751,LOC107744558,LOC103155890,LOC107752024 coding upstream 2666 15336227 ~ 15373301 (+)
itk itk coding upstream 42357 15323500 ~ 15333610 (+)
gria1a gria1a,LOC108269350,LOC108427845,LOC107669094,LOC107664347 coding upstream 92096 15190390 ~ 15283871 (+)
afap1l1a afap1l1 coding upstream 336860 15015912 ~ 15039107 (+)
adrb2a adrb2 coding upstream 489005 14885365 ~ 14886962 (+)
foxa foxa1,LOC108268493,LOC105017826 coding downstream 3443 15381114 ~ 15385222 (+)
zdhhc24 zdhhc24,LOC107550739,LOC107744556,LOC107658142,LOC107561428 coding downstream 21912 15399583 ~ 15402683 (+)
slc24a6a si:ch73-335m24.5,LOC108268508,LOC108427838,LOC107752022,LOC107664362,LOC107560152 coding downstream 26441 15404112 ~ 15420160 (+)
urp1 NA coding downstream 47320 15424991 ~ 15427539 (+)
si:ch73-335m24.2 LOC108269004,LOC108427836 coding downstream 56703 15434374 ~ 15442934 (+)
G115424 NA non-coding upstream 242530 15133177 ~ 15133437 (+)
G115270 NA non-coding upstream 296460 15078702 ~ 15079507 (+)
G115277 LOC108268465,LOC108427847,LOC106604410,LOC107568688,LOC107752032,LOC103036102,LOC107664333 non-coding upstream 305504 15069829 ~ 15070463 (+)
G115220 NA non-coding upstream 451100 14922309 ~ 14924867 (+)
G115223 NA non-coding upstream 461157 14914285 ~ 14914810 (+)
G115719 NA non-coding downstream 283722 15661393 ~ 15661593 (+)
G115720 NA non-coding downstream 284417 15662088 ~ 15662437 (+)
G115728 NA non-coding downstream 296958 15674629 ~ 15674861 (+)
G115731 atp1b4,LOC107658137,LOC107744544,LOC107550763,LOC107752012,LOC107664337 non-coding downstream 310221 15687892 ~ 15689452 (+)
G115774 NA non-coding downstream 368212 15745883 ~ 15746615 (+)
syce3 syce3 other upstream 320477 15054084 ~ 15055490 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other upstream 322610 15051315 ~ 15053357 (+)
ablim3 ablim3,LOC108427857 other upstream 363583 14942349 ~ 15012384 (+)
bcorl1 bcorl1 other upstream 863565 14474957 ~ 14512402 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other upstream 1130773 14233718 ~ 14245194 (+)
rpl39 NA other downstream 364710 15742381 ~ 15744657 (+)
LOC113529420 NA other downstream 365497 15743168 ~ 15743297 (+)
sept6 sept6,LOC107664349,LOC107752004,LOC106611514,LOC107658130 other downstream 373120 15750791 ~ 15773203 (+)
rab41 rab41,LOC106604734,LOC107560298 other downstream 398765 15776436 ~ 15784429 (+)
sox3 sox3,LOC105029621,LOC107102653 other downstream 795788 16173459 ~ 16175845 (+)

Expression


Co-expression Network