urp1


Basic Information

Item Value
gene id urp1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15424991 ~ 15427539 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306208.1
GGAAGCAAAGACTCAAGTGGTTGGAGATTCTGTCAGCATGCTGTCTGTGGCACTGCTCTACATTTTGGCCATGGTTTTCCCTGCAGCTAATGCTTTACCGTTATACTCAGATACAGCACTGACACCACACGAAGACCTCCTTCAGAAACTGGTGACAGAAATAGAGGATGGACAGAGCGATGACCTGAGTGCACAAAGAGATGTCAAGACCATCCTTCCCATCTTGCTTCACCAGGAAAGAGATAGAGACTCTTGGCCTAAAGGAGCGAAAGAAAATCTCCAACAGGATAAAATGAACCACATGGTGGATGACTTGAAGGAAGTAGTCATGAAATTAGCAGCAGCAGATAACCTGCGCTCTCAAGGCTTTCTTCGATCCGAGCAGAACTTACCCAAACCCAACAAGAGAGCCTGTTTTTGGAAGTACTGTGTAACAAACTAGGAGTCCTGTGGGAATTACAGAGGAACAGACACCAAAACGGTCACGTTTGTCTTCTCCTTTAAACATCAATCCAGCAGCCCTTTAACAATGCGTATATTAATTTAACTACAGCACatggatatatttttaaacatgaagaAAGCTAATCTCTGTAAAACAGCTGTGTAGAAAAGTGGAGCTTTGATGAGGCCAACACTGTGTCTGTAAATGTTATGAGCATTTTGTCCAGCAAAGTTGAATCACCTCTGTATTTTTCAATCAGCAATACATCTTCATTCTAAGATCTGCATGttcataaacacactgatgtgCACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306208.1 True 757 mRNA 0.42 5 15424991 15427539

Neighbor

gene id symbol gene type direction distance location
slc24a6a si:ch73-335m24.5,LOC108268508,LOC108427838,LOC107752022,LOC107664362,LOC107560152 coding upstream 4831 15404112 ~ 15420160 (+)
zdhhc24 zdhhc24,LOC107550739,LOC107744556,LOC107658142,LOC107561428 coding upstream 22308 15399583 ~ 15402683 (+)
foxa foxa1,LOC108268493,LOC105017826 coding upstream 39769 15381114 ~ 15385222 (+)
cyfip2 cyfip2,LOC105931286,LOC108427840,LOC107550751,LOC107744558,LOC103155890,LOC107752024 coding upstream 51690 15336227 ~ 15373301 (+)
itk itk coding upstream 91381 15323500 ~ 15333610 (+)
si:ch73-335m24.2 LOC108269004,LOC108427836 coding downstream 6835 15434374 ~ 15442934 (+)
ocrl ocrl coding downstream 27297 15454836 ~ 15482930 (+)
vimr2 LOC108269007 coding downstream 57913 15485452 ~ 15497040 (+)
xpnpep2 xpnpep2,LOC107550741 coding downstream 163425 15590964 ~ 15608062 (+)
sash3 sash3 coding downstream 182775 15610314 ~ 15618406 (+)
LOC117597624 NA non-coding upstream 47320 15375967 ~ 15377671 (+)
G115424 NA non-coding upstream 291554 15133177 ~ 15133437 (+)
G115270 NA non-coding upstream 345484 15078702 ~ 15079507 (+)
G115277 LOC108268465,LOC108427847,LOC106604410,LOC107568688,LOC107752032,LOC103036102,LOC107664333 non-coding upstream 354528 15069829 ~ 15070463 (+)
G115220 NA non-coding upstream 500124 14922309 ~ 14924867 (+)
G115719 NA non-coding downstream 233854 15661393 ~ 15661593 (+)
G115720 NA non-coding downstream 234549 15662088 ~ 15662437 (+)
G115728 NA non-coding downstream 247090 15674629 ~ 15674861 (+)
G115731 atp1b4,LOC107658137,LOC107744544,LOC107550763,LOC107752012,LOC107664337 non-coding downstream 260353 15687892 ~ 15689452 (+)
G115774 NA non-coding downstream 318344 15745883 ~ 15746615 (+)
syce3 syce3 other upstream 369501 15054084 ~ 15055490 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other upstream 371634 15051315 ~ 15053357 (+)
ablim3 ablim3,LOC108427857 other upstream 412607 14942349 ~ 15012384 (+)
bcorl1 bcorl1 other upstream 912589 14474957 ~ 14512402 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other upstream 1179797 14233718 ~ 14245194 (+)
rpl39 NA other downstream 314842 15742381 ~ 15744657 (+)
LOC113529420 NA other downstream 315629 15743168 ~ 15743297 (+)
sept6 sept6,LOC107664349,LOC107752004,LOC106611514,LOC107658130 other downstream 323252 15750791 ~ 15773203 (+)
rab41 rab41,LOC106604734,LOC107560298 other downstream 348897 15776436 ~ 15784429 (+)
sox3 sox3,LOC105029621,LOC107102653 other downstream 745920 16173459 ~ 16175845 (+)

Expression


Co-expression Network