nox1 (nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708)


Basic Information

Item Value
gene id nox1
gene name nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14448511 ~ 14454573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918111.2
cacacctgctgtgaGTCGAGCTGAagattcctctctctctcaccacattaaataaacatggcTAACTGGATCGTAAACCATGGACTGGAAACCTTTATTTTGGTGGTCTGGATGGGCATCAACATCTTCTTGTTCGTTCACTTTTATCTGTTCTATGATTTGGGGCCGCAGTTCTTCTACACCCGTGTGCTGATCGGGTCTGCACTGTCGTGGGCAAGagctcctgctgctgttctcAACTTTAACTGCATGCTCATCCTCCTGCCTGTGTGTCGCAACCTGCTGTCTCTGATCCGTGGTTCCTTCATGTGCTGTGGACGAACCTTGCGGAAACAGCTGGACAAAAATCTTACGTTCCACAAACTGGTCGCCTACATGATTGCCTTGATGACTGCGGTTCACACCATTGCCCATTTGCTGAATGTGGAATGGTTCATCAGTAGCCGTCAGGGACGTTTTGGTCCCCTTGCCGGTAACCTCTCCATGCTTGGGGATGATGACAATCACAATCATGATCACGATCACGAtcacgatgatgatgatgatgatgatgatgagactTTCCTCAATCCTATCCGGTCCGACTCTACGACACCACTCCTATTTGCATTCACTACCATTGCTGGCCTTACAGGAGTTGTGATCACCCTCGCTCTCATCCTTATGATTACTTCATCGATGGAGGTGATACGGCGAAGCTACTTTGAGGTGTTCTGGTACACTCACCACCTCTTCATCATTTTCTTTGCAGGCCTGGTCTTTCACGGGGCAGGGCGCATTGTGCGAAGTCAGACGGATGACCCACCTCACAACACTAGCTTCTGCAAAGATTATCCAGAGAAGTGGGGTAAAATTCCTCAATGTCCCATTCCTCAGTTTGCAGGAGGGTTTCCTCAGACTTGGATGTGGGTGATTGGTCCGATGATCATTTACATATGTGAGAGGCTATTGCGCTTTATCCGCTATATTCAAACTGTAAATTACAAAAAGATTGTGATGCATCCATCCCAAGTCCTCGAGCTGCAGTTAGTGAAGTCTGGATTTAAAATGGATGTTGGACAGTATGTCTTTTTGAACTGTCCAGCCATCTCCCAACTCGAATGGCACCCATTTACAATGACATCAGCCCCTGAGGAGGACTTCTTCAGCTTACACATCCGCTCAGTCGGGGACTGGACTGAGAAGCTCATCAAGATGGTAGAAAATTTACCAGAGGGGAGTCAAGGACCCAAATTGGGTGTGGATGGTCCATTTGGAACAGCCAGTGAAGATGTGTTTGATTACGAGGTCAGCATGCTGGTGGGTGCTGGCATTGGCGTGACCCCATTTGCTTCCATCTTGAAGTCCATTTGGTATAAATTTAAAGATTCCAACCCCAAGCTACGCACCAGAAAGATTTACTTCTATTGGTTGTGCAGGGAGACACATGCCTTTGAGTGGTTTGCAGATTTGCTTCAGGTGCTTgagaaggagatggaggagagaggcATGAAGGACTTTCTTACATACAAACTCTACCTCACTGGATGGGACCATACACACGCAGCCCATGTGATGGTACATTTTGATAAAGACACTGATGTTATCACTGGTCTGAAGCAGAAGACTCACTATGGAAGACCAAACTGGGATAAAGAATTTGAACAAGTTCGACAAGAGAACCCCTCGTCAGTGGTTGGTACATTCCTGTGTGGCCCAGCCTCCTTAGCTGaagatttggaaaagaaatgtgtgaaatattcTAACGTTGATCCACGGAAGACTAGATTTTACTTCAACAAAGAGAACTTTTGAGCTGTTGTTGGTAGCAACCAGTTTAACCAGAAGGACAAGCTCTTCAGTATTCCATTCCCTTTCCAGCGGGAGCTGATGCAATGTCTCGATGGCTGCCTGCATGTGGAGTCCTGAAATAATTTAGAAACTAACTAAACTGATAAGTCTGCAGAAACAAAATATCTGTCCTAGTCCTGTCCAAGTTCTGCACAGCAAAAGCATAGACTCAGCAATGCCTGAGCTATCTGTAATAGTTATGGCATTAGCCTGCTGATCGATATAGTAAAAATTCAGGATCTCCCCCAGACCCCTGCTCAACAATCACACTGAGCCTGTGTGTATTATTCTGCATATCAAATGATCTCCTTTATCCTACTTTGACAGACATCTTCTTGAAGTGACATATTTTTGTAGGCAAGttacataattatattacaatataattttttttttaatgaaggcATGTATGCAACTAGATATCTTTAAGACCTTTCTTTGCAGGAGTTATGGTATTTTCTTTAATCTGGGTGTGGCTTTCTTGCCTTGGTACTGACAAGTCATCTGGTATGAAGGAAGTAATTGTGGTGTTCTGGGTTCAACACTatagttacaaaaaaaataaaggaactCATTAAACATA

Function

symbol description
nox1 Predicted to enable superoxide-generating NAD(P)H oxidase activity. Predicted to be involved in defense response and superoxide anion generation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of NADPH oxidase complex. Predicted to be active in plasma membrane. Is expressed in nervous system. Orthologous to human NOX1 (NADPH oxidase 1).

NR:

description
cytochrome b-245 heavy chain-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918111.2 True 2413 mRNA 0.44 13 14448511 14454573

Neighbor

gene id symbol gene type direction distance location
xkrx xkrx coding upstream 715 14433167 ~ 14447796 (+)
trnat-agu_9 NA coding upstream 28650 14419788 ~ 14419861 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding upstream 218327 14217809 ~ 14230184 (+)
tnmd tnmd coding upstream 290264 14116948 ~ 14158247 (+)
diaph2 diaph2 coding upstream 957976 13065904 ~ 13490535 (+)
srpx2 srpx2 coding downstream 94218 14548791 ~ 14561869 (+)
rnaseh2c rnaseh2c coding downstream 130376 14584949 ~ 14589554 (+)
lsm11 lsm11 coding downstream 140321 14594894 ~ 14598401 (+)
adrb2a adrb2 coding downstream 430792 14885365 ~ 14886962 (+)
afap1l1a afap1l1 coding downstream 561339 15015912 ~ 15039107 (+)
G114993 tmem35a,tmem35 non-coding upstream 39624 14406367 ~ 14408887 (+)
LOC113529218 NA non-coding upstream 236945 14209173 ~ 14211566 (+)
G114783 elf4 non-coding upstream 276918 14096749 ~ 14171593 (+)
G114696 NA non-coding upstream 462649 13985633 ~ 13985862 (+)
G114641 NA non-coding upstream 617126 13831069 ~ 13831385 (+)
G115007 NA non-coding downstream 79129 14533702 ~ 14535946 (+)
G115164 clint1,clint1a,LOC108427862,LOC107669095,LOC107740097 non-coding downstream 154613 14609186 ~ 14610190 (+)
G115168 NA non-coding downstream 164695 14619268 ~ 14621416 (+)
G115206 NA non-coding downstream 330757 14785330 ~ 14786001 (+)
G115223 NA non-coding downstream 459712 14914285 ~ 14914810 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other upstream 203317 14233718 ~ 14245194 (+)
LOC117597726 NA other upstream 1733780 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 1744517 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 2180376 12181274 ~ 12268135 (+)
bcorl1 bcorl1 other downstream 20384 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 487776 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 596742 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 599511 15054084 ~ 15055490 (+)
rpl39 NA other downstream 1287808 15742381 ~ 15744657 (+)

Expression


Co-expression Network