tnmd (tnmd)


Basic Information

Item Value
gene id tnmd
gene name tnmd
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14116948 ~ 14158247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917577.2
TACCAGTGGAATGACATTTGCCTCTGCAGATCTCTGAATGCAGTCCAGTGCTCTGTCTGACTGAGACTTCCTAGAGGACTGGAACTGCAATCATGGAGAATGACTCTCATTCCAGCAGTCAACAGGCGTTCCGCACAGATgttgagctaggaaaaaagaaaaatgctggaTACTTTAGTTACCACTGTGTTGCCCTAATTCTGGGCTTGGTTTTTCTCATGCTGACCCTTTGCATCTTTAGCCTGCGATACATTTGGAGCACAACCCCTGGAAAGATCTACAATTATGAGTACAAGGCTCTGCTGGATGGTGTGGAGACCGAGAGCATGATGGAGATCAATCCTGCCAAACAGTTGGAAATCCTCAGAGTGAGCAATGGCAGTGAGGAGGTCCTGGAGGTCCatgattttcaaaatGGACTGACAGGTATCCGTTTTGCCAAACATCAAAGATGCTACATCAGGACTCAGACCAGGGAGCTGCCCAAACTGGCTGATGTAGACCTGAAGAAGGCAGAGTTTGAGGTTGGTGAGTCTGGAGAGGTGACTATGCAGGTGGTGGACTCTTATGTGTGGATCCCTGCGAAGCAGCCTATCAGTAACAGAGCATTTTTGCAAAACTCCAAGATCTGGGAAATCTGCCAAGAGCTGCCCATCCACTGGATGCACCTATCTCCGGTTGGAGATGCTACGTTCAGTGATGAAGAGGATGTAAAAATGCAGGACACCCTAGAGACACAGGCTCATGCAGTACGTCAAGCTAGGGACATCATGGATGAATTGCCAGTAAACgactatAGTGAAATTGGTCTTCAGCTGGACAGCAGCCTGGATGAACAGGGCTACTGCTGCCAATACTGCCGACGCGGGTACCGCTTCTGTCGTCGCTATCATGAGCCACTGCTCGGCTACTGGCCTTACCCTTACTTTTACCAAGGAGGCAGGGTCATCTGTCAAATCGTCATGCCATGTAACTGGTGGATTGCACGGATGCTGGGcagagtgtgagagagcaaGAACCTACTAAATATGGTGGTGTGCTGCCTAGGGGAAACTCCACCTTGTGTCTGTATCTTATGTTCTGATCTGATCTTCAAATGTTGcgtaaaaaaatgttcaaatatttaaattcaaaactttgcattaaatcttttttttttttttttttttactgttctcAATGCATGATTTTGATCACTTTTACTGTTATCATTCATGCAACAGACATTCaaagaatatgtttttttagCCATAAAAAGTGTGTGGAGAGGAATTAAAAGCTAATGGCTCTTTATTGAGAAATCAATTATGAATGTCAATAGAGTGCTCTATAAATTTGTATCGTCTGCATGGCTTCCACTATGTCTTAAGCCCCTGTTTGGTTTATGCTCTAATCAATAGTAGATTAAAGGCATTGTATAATCTTGTATAGACAATATTGATTTACATATAATTGCAGTACACAGAACTTTATTAAACTAAATCAAGGCACAACTTGCA

Function

symbol description
tnmd Predicted to be involved in several processes, including endothelial cell morphogenesis; negative regulation of endothelial cell proliferation; and negative regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cleithrum; myoseptum; perichondrium; pharyngeal arch 1; and swim bladder. Orthologous to human TNMD (tenomodulin).

NR:

description
tenomodulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917577.2 True 1499 mRNA 0.43 7 14116948 14158247

Neighbor

gene id symbol gene type direction distance location
diaph2 diaph2 coding upstream 626413 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding upstream 786090 13330787 ~ 13330858 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 1748711 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 1965784 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 2156920 11950411 ~ 11960028 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 59562 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 261541 14419788 ~ 14419861 (+)
xkrx xkrx coding downstream 274920 14433167 ~ 14447796 (+)
nox1 nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708 coding downstream 290264 14448511 ~ 14454573 (+)
srpx2 srpx2 coding downstream 390544 14548791 ~ 14561869 (+)
G114696 NA non-coding upstream 131086 13985633 ~ 13985862 (+)
G114641 NA non-coding upstream 285563 13831069 ~ 13831385 (+)
G114639 NA non-coding upstream 293294 13823204 ~ 13823654 (+)
G114545 NA non-coding upstream 412553 13704145 ~ 13704395 (+)
G114528 NA non-coding upstream 445200 13671287 ~ 13671748 (+)
LOC113529218 NA non-coding downstream 50926 14209173 ~ 14211566 (+)
G114984 NA non-coding downstream 222858 14381105 ~ 14455450 (+)
G114993 tmem35a,tmem35 non-coding downstream 248120 14406367 ~ 14408887 (+)
G115007 NA non-coding downstream 375455 14533702 ~ 14535946 (+)
G115164 clint1,clint1a,LOC108427862,LOC107669095,LOC107740097 non-coding downstream 450939 14609186 ~ 14610190 (+)
LOC117597726 NA other upstream 1402217 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 1412954 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 1848813 12181274 ~ 12268135 (+)
G113831 NA other upstream 1853686 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 3226906 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 75471 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 316710 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 784102 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 893068 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 895837 15054084 ~ 15055490 (+)

Expression


Co-expression Network