G114545


Basic Information

Item Value
gene id G114545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13704145 ~ 13704395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135187
cttttcaaagccattttcacccctgtttacatttatggcatttggcagacgcccttatccagagcgacttacaatagtgctttgaagtctatcaaaaatacattctgatattggctcgctaggtcacaaactaggaataccatcagtccaaaactctgttggggaggtgctttttttttcttttttttgtgaaagtgctaatttaaatattttatgaagaggtaagtctttagatgtcgtttgaagactgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135187 True 251 lncRNA 0.37 1 13704145 13704395

Neighbor

gene id symbol gene type direction distance location
diaph2 diaph2 coding upstream 213610 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding upstream 373287 13330787 ~ 13330858 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 1335908 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 1552981 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 1744117 11950411 ~ 11960028 (+)
tnmd tnmd coding downstream 412553 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 513414 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 715393 14419788 ~ 14419861 (+)
xkrx xkrx coding downstream 728772 14433167 ~ 14447796 (+)
nox1 nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708 coding downstream 744116 14448511 ~ 14454573 (+)
G114528 NA non-coding upstream 32397 13671287 ~ 13671748 (+)
G114526 NA non-coding upstream 34036 13669791 ~ 13670109 (+)
G114509 NA non-coding upstream 47809 13656086 ~ 13656336 (+)
G114361 NA non-coding upstream 122775 13580758 ~ 13581370 (+)
G114360 NA non-coding upstream 125315 13578188 ~ 13578830 (+)
G114639 NA non-coding downstream 118809 13823204 ~ 13823654 (+)
G114641 NA non-coding downstream 126674 13831069 ~ 13831385 (+)
G114696 NA non-coding downstream 281238 13985633 ~ 13985862 (+)
G114783 elf4 non-coding downstream 392354 14096749 ~ 14171593 (+)
LOC113529218 NA non-coding downstream 504778 14209173 ~ 14211566 (+)
LOC117597726 NA other upstream 989414 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 1000151 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 1436010 12181274 ~ 12268135 (+)
G113831 NA other upstream 1440883 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 2814103 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 529323 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 770562 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 1237954 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 1346920 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 1349689 15054084 ~ 15055490 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G316687 NA non-coding NW_019172875.1 APWO02000072.1 725674 ~ 733372 (-)