G114361


Basic Information

Item Value
gene id G114361
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13580758 ~ 13581370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134986
CTGAGAGCTGTCTGGCCTGGTTCAAGAGTTATTGTTCTGGTCGTTTACAATCAGTGACGGTAGAGGGGCTTCTGTCAGATCCCTTGCCCCTATTCAAAGGGGTCCCACAAGGAAGCATATTGGGGCCtatactttataatatttatgttaatgacATTATTCTTGATGCAGGTGATTCTCATGTACATTTATACGCTGATGACActatcatttatacatttaattctTCCCTGACTACTGCACTATTTTTATTGCAGGCCAGTTTTACTCGCATCCAACATGCTTTCTCTAGTCttcatttagttttaaatacaaataaaacaaaatttatgGTCTTTAACAGAAATCTTCCACACATTGAGTATCCGCCTAAAATTTTCCCATTGGATGGCTCTGAGATCGATTATGTTGAATGGTATAAATATCTTGGTATCTGGCTTGATAGCAAACTGTCATTTGAAACTCACATAAATGTACTGCTCACAAAGGTTAAAACTCATATTGGTTTTCTTTATCGTAACAAATCTTCTTTTACGCATTCTTCAAAACAGCTTCTGGTTAAAATGACAGTGCTCCCAATTCTGAATTATGGTGATGTAGTTTATAGGTCTGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613651

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134986 True 613 lncRNA 0.37 1 13580758 13581370

Neighbor

gene id symbol gene type direction distance location
diaph2 diaph2 coding upstream 90223 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding upstream 249900 13330787 ~ 13330858 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 1212521 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 1429594 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 1620730 11950411 ~ 11960028 (+)
tnmd tnmd coding downstream 535578 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 636439 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 838418 14419788 ~ 14419861 (+)
xkrx xkrx coding downstream 851797 14433167 ~ 14447796 (+)
nox1 nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708 coding downstream 867141 14448511 ~ 14454573 (+)
G114360 NA non-coding upstream 1928 13578188 ~ 13578830 (+)
G114339 NA non-coding upstream 19852 13559490 ~ 13560906 (+)
G114338 NA non-coding upstream 28311 13549255 ~ 13552447 (+)
LOC113528834 NA non-coding upstream 31946 13533000 ~ 13548812 (+)
G114509 NA non-coding downstream 74716 13656086 ~ 13656336 (+)
G114526 NA non-coding downstream 88421 13669791 ~ 13670109 (+)
G114528 NA non-coding downstream 89917 13671287 ~ 13671748 (+)
G114545 NA non-coding downstream 122775 13704145 ~ 13704395 (+)
G114639 NA non-coding downstream 241834 13823204 ~ 13823654 (+)
LOC117597726 NA other upstream 866027 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 876764 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 1312623 12181274 ~ 12268135 (+)
G113831 NA other upstream 1317496 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 2690716 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 652348 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 893587 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 1360979 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 1469945 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 1472714 15054084 ~ 15055490 (+)

Expression


Co-expression Network