LOC113528834


Basic Information

Item Value
gene id LOC113528834
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13533000 ~ 13548812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403000.2
TGCggtgtgtgtatgcgtgagCAGAGAAGCATCGTGCGTCTCGGGGAAGAGCGCCGTGGACTCGGCTTCGTAGCGATCTAAATATTTGGATTAAACCGTCATTTGGGTTAAATGTGATTTCATTGTCTTTAAGACAAGTCAGTTCATTGTAATGCAGTGTCTAAAAGGACATTTAATGTGCAAACTGCAGTGAATGCGTTTggatcatgtgtgtgtggactgagCTACCTCGTGGTGTATGCTAAGAAGTACATGtggCTGTAataacgagagagagagtgtggcataGCTGAAGGAACAGCTGAAGGATTTCTGTCGCCAGTGGTTGATGGCGGACCAGTGGGAGGCGGAACAGATCATTAAACTGGTGGTACTGGCGAAATTCATCACAAAGCCATTCGGATGGCAGAGGATCACTTGGCGGCAGTCCTGTTCCAGgaaaacCAGCCTATGAAATGAGTGTCATCCCGAATGGATACCATCATTACGGGCATGCAGAAATCAAAGAAATGTACTCTGGGGGGTTTAATGGGAGGACAAAGAGACAGCAAGGTCTCACAGGAAACAACAATGCACCTCCGACACCATCGGGTCTAGCTGGCCAGAGATTAGAGTTAGATGAAGCTGCACCACCAGATGAAGCTTCACAGAGGTCACAGATGAATGAAGCTGCACCAAAGGACAACactgaagaacagcaggaaTTTGTAGCCGTAGCCGTTCCAAAATTAACCACTTGTTGGAGGCGAACAGGATACTGAAGGAAGAGTTCTCCCAAAAGAAGATGGATGAGCATTTTTTGAAAGATGATGTGAAGGTCAAGTACTACACTGGGCTTCCATGTTTTGCTGTTATGATGGGTGTCGCAGCTTCTTCCTTGCCTACTACAGACAGGCCGAAAGCTTTCACCTTTTCAGATGCTTTTTTTAACTCTGATGTGCCTGAGGCTGAATCTGCCAATCCAGCACATTGCACACCTCTACTGAAAAGATTGAAAGACTGTGTCCACCATGTTCAGAGACATCATAGGTACAATGTTTACATACCTTAGCCCTTTAGTGCACAGGCCAGAGACATTGCTTGCTAGGCAGCATGCCACATCAGTTTATGGAGGCTTTAGGCAATCTTGTTGCCGTTATTGTGGACTGCTTTGAAATTAACACTGAGAGAGCATCAAATCTGAAAGCTAGAGCATAGACATTTACCCActacaaacacaagcacacctTAAAGTATCTCACTGGCATTACACCACAGGGAGCTATCTCTTTCATTTCCAAAGAGTGGGGAGGTTATGTCAGTGACAAGCATATGACTGAGAATAGTGGCCTTCTTAATAAACTATTGCCTGGAGACTTGGTGTTGGCGGATCGTGGATTTGACATCAGGGACAGTGTCAGACTAATGTGGGCAGTAGTGAAAATCCCTGCATTCACAAGAGGATGCTGCCAGCTGGATGCAAAAGATCCACCAGATAGGAGGAGACACACCAGATAGGTCACCTCAGGGTCCATGTGGAGAGGGTGATTGGATGTGTACTCACCAAGTACACCATACTAAGTGAGACTGTACCAGTGAGCATGGTACTCCCATATGAAGGCAAGGACATGATATTCCTTGACAAGATTGTGCCTGTGTGCTATGCCTTGACTAAAATGTGCCCCAGTGTTGTTATGAAAGTGTAAATCATGACATAAAGAATGTTAACTAAATATGAACTGCATATCCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403000.2 True 1732 lncRNA 0.45 3 13533000 13548812

Neighbor

gene id symbol gene type direction distance location
diaph2 diaph2 coding upstream 42465 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding upstream 202142 13330787 ~ 13330858 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 1164763 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 1381836 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 1572972 11950411 ~ 11960028 (+)
tnmd tnmd coding downstream 568136 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 668997 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 870976 14419788 ~ 14419861 (+)
xkrx xkrx coding downstream 884355 14433167 ~ 14447796 (+)
nox1 nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708 coding downstream 899699 14448511 ~ 14454573 (+)
G114337 NA non-coding upstream 71922 13458698 ~ 13461078 (+)
G114334 NA non-coding upstream 147677 13378993 ~ 13385323 (+)
G114332 NA non-coding upstream 154054 13364703 ~ 13378946 (+)
G114330 NA non-coding upstream 217497 13315098 ~ 13315503 (+)
G114326 NA non-coding upstream 398632 13122745 ~ 13134368 (+)
G114338 NA non-coding downstream 443 13549255 ~ 13552447 (+)
G114339 NA non-coding downstream 10678 13559490 ~ 13560906 (+)
G114360 NA non-coding downstream 29376 13578188 ~ 13578830 (+)
G114361 NA non-coding downstream 31946 13580758 ~ 13581370 (+)
G114509 NA non-coding downstream 107274 13656086 ~ 13656336 (+)
LOC117597726 NA other upstream 818269 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 829006 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 1264865 12181274 ~ 12268135 (+)
G113831 NA other upstream 1269738 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 2642958 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 684906 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 926145 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 1393537 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 1502503 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 1505272 15054084 ~ 15055490 (+)

Expression


Co-expression Network