st3gal5 (st3gal5)


Basic Information

Item Value
gene id st3gal5
gene name st3gal5
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12181274 ~ 12268135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134398
AGACTGTTAGCATTCACTTTATTTGCCAGTTGCCACCAGCTCCAAGACGAAGGAGAAGGAAGGAGACTGTCTTTGTGGAAAGATCATATACAGAGGAGGTTCATTGTACCACTCATGGTCATGGGCTTGATTTCCCTTGGCATTCTAAAACTGCCAATGTTCAATAATAATCCAAAACCTGTCATGATGCTTGTGGACCCACATCATCGAGagtCACTCTGGGACAAGCTGTTTTTCTGGCAGAAGGTACCTGGTAGCATTCCAGTTGATCCTTCAAAGTTCCGTTTACTGAATCCTGAGATCATCAGAGAGACAGCCTTGGAACTGCTCCACTACCCAAATCCTAAGCCTCGACAATGGGGCTGGGATCAGAAGGCAACGTCAGCGGGGAAGACACTCCCCTTCTGCCTCCAGCAATGGCCATGACTCTCTAAAGGCTGCAGCTGTTAACCCTCCATCTCCTACCAGTGCTGCTAAAAAAGGGATTGCCGCACCAACCACTGGCcacttcgagaggctcgtcatgaggcacatcaagaccctgctgccccctcactggaccccctgcaatttgTTTCcgtcccaaccgctcaacagatgacgccatcaccaccaccctccatcttgccctcacccacctggacaatacagactgttcgaatgctgttcatagacttcagttcagcattcaagaAAATCATtactcagcacctgattggaaagctgaacctgctgggcctgaacacctccctctgcaactggatcctggacttcctgactgggagacctcagtcagtccggatcgggaacagcatctccaacaccaccacactgagcactggggccccccagggctgtgtgctcagtccactgctgttcaccctgctgactcacgacgaatcacatcatcaagttcattGATGACACgactgtggtgggtctcatcagcaagaacgacgggtcagcatacagagaggaggtgcaacggctaacggactggtgcagagccaacaacctgtctctaaatgtggacaaaactaaagagatggttgttgacttcagaagagaacagaatgaccactctccgctgaacatcagcggctcctccgtggagatcgtcaagagcaccaaatttcttggtgttcacctggcggagaacctcacctggtcactcaacaccagttccataacaaTGAAAGCCCAGCAgtgcctgtactttctgagaagactgaggaaagcacatctcccactccccatcctcaccatgttctacagagggactatagagagcatcctgtg
>TU134399
AGACTGTTAGCATTCACTTTATTTGCCAGTTGCCACCAGCTCCAAGACGAAGGAGAAGGAAGGAGACTGTCTTTGTGGAAAGATCATATACAtgagcggTGGCAAGGATAAAGAGGACAGAAAAGAGCGccttgagaaagagagagcagtgCTGCTCCGCTCCATCTCAGGACATAGGGTGGCGGATGCACTCTTCCACATTATCTCCTGGGTCAGGATCCCGAAAGAGATCCTGACCGATCAGGACACTACATTTATGTCACGAACACTATGCGAACCGTACGAATTGCGGGGCATTAAATCAATTTGAACCAGTGTCTAATCGCAGgcttaaaaacatgatttgaaAGTTCATTCACAATGATGCACGGAATTGGGATAAATGGATAgagcccctgttatttgcagtctGAGAGGGTTTTCCCCTGTTGAATTATTATACGGGCGGAAGCCTCCTGGTGTCTTAAACATCATTAAGGAGCACTGGAAGGAGGGACCTTTTAATAGTAAAAGTGAAATCCAATACGTTcatgacctgagagcaaaactccacaccttaAGTCACATAACATAGACGAAttttaagtgaagtgacttgtggccaagtatggtgacccatacttggaatttgtgctctgcatttaacccatccaagtgcacacacagtagtgaacgcacacacacacacacacacacacacacaacgtgaacacacacccggggCAGTGGACatccttttttgctgcagcaccAGGGGAGCActttgggggttcggtgccttgctcaagggtctcacctcagtcgtggtattgagggtgggagagagagcgctggtcattcactccccccacctacaatccctgccggacctaggactcgaacccacaaccttcaggttcaccttcgggttgcaagtcctaCTCTCTATCCATCAGGCCATGACTGCCCCTGAATTTGCGTCAAGAACGGCAAGTCCGGCTGTATAACGGGTACTCGTCTAAGGGAATTCACACCGGGAGATTACTTGCTCATTTTACTGCCCACATTGAGCTCTGAATTACTTGCCAAGTGGAAAGGGCTCTTTGAGATCACACGGCGAGTCGGGGATGTTGACTATGAGGTCAGGTGAATGGATAGAGGCGGGGCACGACGGATTTACCACCTTAACCTCCTCAAACCGTGGAGAAAGGGGGTTCATATGGAATTGCCAACAATCGTTCCAGAGAAGGAGGGGCTAGGGCCGGAGGTTAATCCCAAAACAACGGCTCAGTCAGTCCCTTGTGGAGACCACCTCTTGCAATCCCAACTCGCAGACATTGCCAAGTGGCAAGCGGAGTTTGCCAATGTGCTCTTGCCTCTCCCTGGTCGCACTAAcctcagagcatcacactgaaaCACCCCCAGGGGTGATAGTACTTAGCCACCCCTATTGTCTgccaaaacacaaaaagcaaaTAGTTTGGGAGGAGCTCAAGGCCACGCTAAATTTGATGCATACCCAATGCCTTGCATTGACAAACTGCTCAATTGGTTAGGTgcagcttatttttatttgacactggatttgacaaagggatattggcagattcccttgactCCATTATCCCATGAAAAACGACCTTTCCCACTCTGTTCGGTTTACACCAGTTCATCACACTTCCGTTTGGACTGTTTGGGAACGTTGTCCCGCAACGTTCCAACGACTCATGGACAGAGTCCTCTGCCCGCACAATGCATATGCCGCCACATACCTCGAGGACATTatcatttatagtaatgattggcagcagCATTTAAAACATCTAAGGGCTGTCCTGAGTTAATTGAGATGGTCAGGACtcacagcaaatccaaaaaaGTGTGCAATTGGGTGGGTGGAAGTACGGTATCTGGTAGGCCGGACAGCTTCCCAGCCTGAGTCAGGCAATGGGGGTATGGGTAAATGGGGGAGTGCTCAAGCGCCGGTTTCAGAATGGGGGGTGGAATCAGAGAAGGTGAGTGTtaaggaatgcacacctgcGAAGAATTCCATTTCTGAATGCAATGGAATGCAGTGAGCGGTGGCAAGGATAAAGAGGAGAGAACtctgggggtgtgtgtgtgtgttcatctttGGGAGATTAAAACTGCACCGCTGAAAAGCGAGtcagaaaaaagggaaaataaaaggaaaagctgTTTAGTGGGCTCAAACCCAGCCTGCCTCCCATCTCCACGTTCCCCCACATAAGGGATCCTTTAcaacctcataccaactgttaAGCATGGTGGTGAAGGCGTGATGATTTGGGCCTGTTTTGCAgtcacaggacctgggaaacttacATTGAGACAATGTAGAACTCCACTTTAtatcagaatattcttgagacaaatgcgAGACCAACTGTCTAGCAGCTTAAGAAGTCAAAATTGGGTCATACatcaggacaatgatcccaagcacaccagcaaattgacatctgaatggctaaagaagaaaaaaatcaaggtgatGGAATGGctaagtcaaagtccagacctcaaccccattgagatgctgtggcgggATCTtaagagctgtgcataaacaaatgccctcaaacatcaatgaactgacacaatgttgtaaagaagagtgggccagaATTTCTCCAGAACGATGTGAGAGACTAATGAAttcctacacaaaatgtttacttcatgttattgttgctaaaggtggttctacatataggatgtacttatttttcccccacctggtttctgaatgttggtttccTTTTTGAAAAAATGGctacatattgaaatatattgtgttattttgttgtcacctgaggttatttatttgtttatagaagttgatgAGGACAACACAATTGTCATTTAGGTTTGtcattgataaataaaaacatagactTATAGGAGGGTGTGCTTTCTTTTTCCAAAGACTATACACTTAGTTAGGTATTTGGTGGCATTGtcttttaattacttttaattcCTCATGATTCCATCTATTTTTTGAAGATCACCAGttccttttccagcaaaacactcCCATACTATGATTCAGTCACCCCCATGTTTCACAGCTGGGATGATGCAGGACTCTTAATGGTGGATATACATTTTTGGTACTTGATGCTTCCAATTGCTTCACCAGTTCCagttgttgtcttggggttcagttgagCCTTTCAGACCACTGG
>XM_026940335.2
GTCTCTAAATGCGGGTAGTTTCACACTACAGTATCAGACTGTTAGCATTCACTTTATTTGCCAGTTGCCACCAGCTCCAAGACGAAGGAGAAGGAAGGAGACTGTCTTTGTGGAAAGATCATATACAgcctGACCACCTGAAGAATGGGGAAAAGCTGACTGAGTCCATGGGAAGTGGAGAAAAAAGATTTCAGTTGTTCACTGGCAGGATGAGGAAAGCAGTGCCAGTATGTCATGTGCCTTCATGGAGGAGGTTCATTGTACCACTCATGGTCATGGGCTTGATTTCCCTTGGCATTCTAAAACTGCCAATGTTCAATAATAATCCAAAACCTGTCATGATGCTTGTGGACCCACATCATCGAGagAAACATGGAGATGATCACTGGATACGCAATCCCTTTGGAATCGACATGGAAAGCATCACATTGCCAAGCAATGAAGAGAATCCGCTGGTGGAGCCGTCATGTGATCAGATGCCGAAAAAGAAATTCAGTGAGCGTGTCCATTCCTTTGTCAGAAGTGTGTTAGCCCGAGAATGCAGACCATCTTTTACAAGAAGGAACATCGAGAGAATGTATTCTAGTTCCGTGCCCGTGGCTGAGCCCTTcttacaaaaaaacagcaacttAACAGAACAAATATTTGAGTATCCACCACCGTTTGGATTTCGGGACCTGCAACACAAGCTAAAAGAAGTCCTGGATCTCATACCCAGTTCCTTGTCAGAGAATACTGGAGGGCATGATTGCCGTCGATGTGTTGTAGTTGGCAATGGAGGCATACTTCGAGGACTGGAGCTTGGGCCTCTCCTGAACCAGTTCAATGTGATCTTAAGATTGAACAGTGGCCCAGTGAGAGACTTCAGTAGAGATGTGGGAAACCGCACTACTATCAGGATGAGTTATCCTGAAGGCAGCCCAAAGATATGGGAAGATGTCGACCCTCAGCTTCAGTTTGTAGCTGTTATTTACAAAGCTGTTGATTTCAACTGGCTTCATGCTATGATTTCAAGAACAACAATAtCACTCTGGGACAAGCTGTTTTTCTGGCAGAAGGTACCTGGTAGCATTCCAGTTGATCCTTCAAAGTTCCGTTTACTGAATCCTGAGATCATCAGAGAGACAGCCTTGGAACTGCTCCACTACCCAAATCCTAAGCCTCGACAATGGGGCTGGGATCAGAATATTCCTACTTTAGGGGTATCTGCTGTTAATCTGGCGACGTACTTGTGTGATGAAGTCAGCCTAGCAGGCTTTGGTTACAACATTAGCCAGAAGGAGACACCACTGCATTACTATGACAACCTACCTATGACTGCTATGTTGAAGCAAGCCATGCACAATGTGGACCATGAGACTGTTTTTCTCCAGAGACTGGTTGCAGCTGGCAGCATTTTGGACCTTACAGGGGGGGTACATTGCAGTTTCTGTTCAACATAAAGCCACTTTGCACTAATGTTGGGATATTTTGACAGCCCAAAGACAGGATACAGTGTTTTCCATTGTAATTAATACATGATGCAATTTAAATTCTTTTCATAGTTGTTaaaagtattttgtttttctgtttcattcatAGCTGTTACTGGTTTTGTTCTGGTTGTACTGGTTGTGAAcagtgtattttaattattgtatatttttaataattaccaTGTactttaattttcatattttctcagaattaatttatgtgtgtgtg
>XM_026940336.2
GTCTCTAAATGCGGGTAGTTTCACACTACAGTATCAGACTGTTAGCATTCACTTTATTTGCCAGTTGCCACCAGCTCCAAGACGAAGGAGAAGGAAGGAGACTGTCTTTGTGGAAAGATCATATACAgcctGACCACCTGAAGAATGGGGAAAAGCTGACTGAGTCCATGGGAAGTGGAGAAAAAAGATTTCAGTTGTTCACTGGCAGGATGAGGAAAGCAGTGCCAGTATGTCATGTGCCTTCATGGAGGAGGTTCATTGTACCACTCATGGTCATGGGCTTGATTTCCCTTGGCATTCTAAAACTGCCAATGTTCAATAATAATCCAAAACCTGTCATGATGCTTGTGGACCCACATCATCGAGagCGTGTCCATTCCTTTGTCAGAAGTGTGTTAGCCCGAGAATGCAGACCATCTTTTACAAGAAGGAACATCGAGAGAATGTATTCTAGTTCCGTGCCCGTGGCTGAGCCCTTcttacaaaaaaacagcaacttAACAGAACAAATATTTGAGTATCCACCACCGTTTGGATTTCGGGACCTGCAACACAAGCTAAAAGAAGTCCTGGATCTCATACCCAGTTCCTTGTCAGAGAATACTGGAGGGCATGATTGCCGTCGATGTGTTGTAGTTGGCAATGGAGGCATACTTCGAGGACTGGAGCTTGGGCCTCTCCTGAACCAGTTCAATGTGATCTTAAGATTGAACAGTGGCCCAGTGAGAGACTTCAGTAGAGATGTGGGAAACCGCACTACTATCAGGATGAGTTATCCTGAAGGCAGCCCAAAGATATGGGAAGATGTCGACCCTCAGCTTCAGTTTGTAGCTGTTATTTACAAAGCTGTTGATTTCAACTGGCTTCATGCTATGATTTCAAGAACAACAATAtCACTCTGGGACAAGCTGTTTTTCTGGCAGAAGGTACCTGGTAGCATTCCAGTTGATCCTTCAAAGTTCCGTTTACTGAATCCTGAGATCATCAGAGAGACAGCCTTGGAACTGCTCCACTACCCAAATCCTAAGCCTCGACAATGGGGCTGGGATCAGAATATTCCTACTTTAGGGGTATCTGCTGTTAATCTGGCGACGTACTTGTGTGATGAAGTCAGCCTAGCAGGCTTTGGTTACAACATTAGCCAGAAGGAGACACCACTGCATTACTATGACAACCTACCTATGACTGCTATGTTGAAGCAAGCCATGCACAATGTGGACCATGAGACTGTTTTTCTCCAGAGACTGGTTGCAGCTGGCAGCATTTTGGACCTTACAGGGGGGGTACATTGCAGTTTCTGTTCAACATAAAGCCACTTTGCACTAATGTTGGGATATTTTGACAGCCCAAAGACAGGATACAGTGTTTTCCATTGTAATTAATACATGATGCAATTTAAATTCTTTTCATAGTTGTTaaaagtattttgtttttctgtttcattcatAGCTGTTACTGGTTTTGTTCTGGTTGTACTGGTTGTGAAcagtgtattttaattattgtatatttttaataattaccaTGTactttaattttcatattttctcagaattaatttatgtgtgtgtg
>XM_026940337.2
GTCTCTAAATGCGGGTAGTTTCACACTACAGTATCAGACTGTTAGCATTCACTTTATTTGCCAGTTGCCACCAGCTCCAAGACGAAGGAGAAGGAAGGAGACTGTCTTTGTGGAAAGATCATATACAgcctGACCACCTGAAGAATGGGGAAAAGCTGACTGAGTCCATGGGAAGTGGAGAAAAAAGATTTCAGTTGTTCACTGGCAGGATGAGGAAAGCAGTGCCAGTATGTCATGTGCCTTCATGGAGGAGGTTCATTGTACCACTCATGGTCATGGGCTTGATTTCCCTTGGCATTCTAAAACTGCCAATGTTCAATAATAATCCAAAACCTGTCATGATGCTTGTGGACCCACATCATCGAGagAAACATGGAGATGATCACTGGATACGCAATCCCTTTGGAATCGACATGGAAAGCATCACATTGCCAAGCAATGAAGAGAATCCGCTGGTGGAGCCGTCATGTGATCAGATGCCGAAAAAGAAATTCAGTGAGCGTGTCCATTCCTTTGTCAGAAGTGTGTTAGCCCGAGAATGCAGACCATCTTTTACAAGAAGGAACATCGAGAGAATGTATTCTAGTTCCGTGCCCGTGGCTGAGCCCTTcttacaaaaaaacagcaacttAACAGAACAAATATTTGAGTATCCACCACCGTTTGGATTTCGGGACCTGCAACACAAGCTAAAAGAAGTCCTGGATCTCATACCCAGTTCCTTGTCAGAGAATACTGGAGGGCATGATTGCCGTCGATGTGTTGTAGTTGGCAATGGAGGCATACTTCGAGGACTGGAGCTTGGGCCTCTCCTGAACCAGTTCAATGTGATCTTAAGATTGAACAGTGGCCCAGTGAGAGACTTCAGTAGAGATGTGGGAAACCGCACTACTATCAGGATGAGTTATCCTGAAGGCAGCCCAAAGATATGGGAAGATGTCGACCCTCAGCTTCAGTTTGTAGCTGTTATTTACAAAGCTGTTGATTTCAACTGGCTTCATGCTATGATTTCAAGAACAACAATAtCACTCTGGGACAAGCTGTTTTTCTGGCAGAAGGTACCTGGTAGCATTCCAGTTGATCCTTCAAAGTTCCGTTTACTGAATCCTGAGATCATCAGAGAGACAGCCTTGGAACTGCTCCACTACCCAAATCCTAAGCCTCGACAATGGGGCTGGGATCAGAAGGCAACGTCAGCGGGGAAGACACTCCCCTTCTGCCTCCAGCAATGGCCATGACTCTCTAAAGGCTGCAGCTGTTAACCCTCCATCTCCTACCAGTGCTGCTAAAAAAGGGATTGCCGCACCAACCACTGGCcacttcgagaggctcgtcatgaggcacatcaagaccctgctgcccc

Function

symbol description
st3gal5 Enables lactosylceramide alpha-2,3-sialyltransferase activity. Acts upstream of or within glycosphingolipid biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in salt and pepper syndrome. Orthologous to human ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5).

NR:

description
lactosylceramide alpha-2,3-sialyltransferase isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134398 False 1299 TUCP 0.51 4 12181309 12268135
TU134399 True 3191 lncRNA 0.46 3 12181309 12188140
XM_026940335.2 False 1704 mRNA 0.43 8 12181274 12257002
XM_026940336.2 False 1572 mRNA 0.43 7 12181274 12257002
XM_026940337.2 False 1363 mRNA 0.47 8 12181274 12267387

Neighbor

gene id symbol gene type direction distance location
sil1 sil1 coding upstream 30110 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 221246 11950411 ~ 11960028 (+)
LOC113542778 NA coding upstream 264797 11863839 ~ 11916477 (+)
cx31.7 LOC108268987,LOC108436706,LOC107688616,LOC107746179,LOC107564189,LOC107674867,LOC107724542 coding upstream 339217 11839808 ~ 11842057 (+)
LOC113542863 rnf128 coding upstream 388845 11769809 ~ 11792429 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding downstream 53123 12321258 ~ 12368237 (+)
diaph2 diaph2 coding downstream 797769 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding downstream 1062652 13330787 ~ 13330858 (+)
tnmd tnmd coding downstream 1848813 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 1949674 14217809 ~ 14230184 (+)
G113821 NA non-coding upstream 25057 12155979 ~ 12156217 (+)
G113769 NA non-coding upstream 155364 12022450 ~ 12025910 (+)
G113751 NA non-coding upstream 177508 12003553 ~ 12003766 (+)
G113747 NA non-coding upstream 181001 12000036 ~ 12000273 (+)
G113704 NA non-coding upstream 245236 11935357 ~ 11936038 (+)
G113843 NA non-coding downstream 21222 12289357 ~ 12289671 (+)
G113844 NA non-coding downstream 25052 12293187 ~ 12294051 (+)
G113860 NA non-coding downstream 45703 12313838 ~ 12314041 (+)
G113862 NA non-coding downstream 48963 12317098 ~ 12317305 (+)
G113868 NA non-coding downstream 110097 12378232 ~ 12378647 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 1291232 10887261 ~ 10890042 (+)
LOC113542793 LOC108269120 other upstream 1324462 10842754 ~ 10856812 (+)
G112653 hmgn5 other upstream 1717001 10458825 ~ 10464273 (+)
polr1d rpac2,polr1d,LOC108268918,LOC105906265,LOC102228228,LOC103139890,LOC108443107 other upstream 2060501 10106168 ~ 10120773 (+)
frmpd3 frmpd3,LOC107746311,LOC107674886,LOC107684925,LOC107746170 other upstream 2281295 9769478 ~ 9899979 (+)
LOC113542746 NA other downstream 421499 12689634 ~ 12703994 (+)
LOC117597726 NA other downstream 439874 12708009 ~ 12714731 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 1965583 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 2206822 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 2674214 14942349 ~ 15012384 (+)

Expression


Co-expression Network