G113843


Basic Information

Item Value
gene id G113843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12289357 ~ 12289671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134410
ccaggctcaaaagggaacccatcctcatctgggtgcaacggatagtgcaattataaataaatcccttctattgtgtactatatggacaaatagtgcaattgtgcaaccaatcacagtatttgcaagaggtccggctggttaaaatctatccactgtccactgatggagtcctgagtacgaagctgctcgtggcaactgcagccccaaagccactacagcagtcgcagtcccaagccattacagtacagctccccatatgtgatccccaagccatctccacagcccccaggtggcaccatccccagcaatccaaac

Function

NR:

description
PREDICTED: NEDD8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134410 True 315 lncRNA 0.50 1 12289357 12289671

Neighbor

gene id symbol gene type direction distance location
sil1 sil1 coding upstream 138193 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 329329 11950411 ~ 11960028 (+)
LOC113542778 NA coding upstream 372880 11863839 ~ 11916477 (+)
cx31.7 LOC108268987,LOC108436706,LOC107688616,LOC107746179,LOC107564189,LOC107674867,LOC107724542 coding upstream 447300 11839808 ~ 11842057 (+)
LOC113542863 rnf128 coding upstream 496928 11769809 ~ 11792429 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding downstream 31587 12321258 ~ 12368237 (+)
diaph2 diaph2 coding downstream 776233 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding downstream 1041116 13330787 ~ 13330858 (+)
tnmd tnmd coding downstream 1827277 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 1928138 14217809 ~ 14230184 (+)
G113821 NA non-coding upstream 133140 12155979 ~ 12156217 (+)
G113769 NA non-coding upstream 263447 12022450 ~ 12025910 (+)
G113751 NA non-coding upstream 285591 12003553 ~ 12003766 (+)
G113747 NA non-coding upstream 289084 12000036 ~ 12000273 (+)
G113704 NA non-coding upstream 353319 11935357 ~ 11936038 (+)
G113844 NA non-coding downstream 3516 12293187 ~ 12294051 (+)
G113860 NA non-coding downstream 24167 12313838 ~ 12314041 (+)
G113862 NA non-coding downstream 27427 12317098 ~ 12317305 (+)
G113868 NA non-coding downstream 88561 12378232 ~ 12378647 (+)
G113871 NA non-coding downstream 91559 12381230 ~ 12381449 (+)
st3gal5 st3gal5 other upstream 21222 12181274 ~ 12268135 (+)
G113831 NA other upstream 26095 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 1399315 10887261 ~ 10890042 (+)
LOC113542793 LOC108269120 other upstream 1432545 10842754 ~ 10856812 (+)
G112653 hmgn5 other upstream 1825084 10458825 ~ 10464273 (+)
LOC113542746 NA other downstream 399963 12689634 ~ 12703994 (+)
LOC117597726 NA other downstream 418338 12708009 ~ 12714731 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 1944047 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 2185286 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 2652678 14942349 ~ 15012384 (+)

Expression


Co-expression Network