G113862


Basic Information

Item Value
gene id G113862
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12317098 ~ 12317305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134429
caTGACTCAATATCATGCAAGAAATCAGATTAcaccaaaaacattttttagcaCCCCCTCGTGCTCAAATGACATGAATATTTTTGCAGACTCAAAAATCTCATGTTGAGCCACCAAGCCTTGTCACAATAGGTGTCTATGCACCTTTGGTACTTGACCcctaaatatagctgcaaaAAACTACTGACTACATAGAGCCACCATGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134429 True 208 lncRNA 0.40 1 12317098 12317305

Neighbor

gene id symbol gene type direction distance location
sil1 sil1 coding upstream 165934 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 357070 11950411 ~ 11960028 (+)
LOC113542778 NA coding upstream 400621 11863839 ~ 11916477 (+)
cx31.7 LOC108268987,LOC108436706,LOC107688616,LOC107746179,LOC107564189,LOC107674867,LOC107724542 coding upstream 475041 11839808 ~ 11842057 (+)
LOC113542863 rnf128 coding upstream 524669 11769809 ~ 11792429 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding downstream 3953 12321258 ~ 12368237 (+)
diaph2 diaph2 coding downstream 748599 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding downstream 1013482 13330787 ~ 13330858 (+)
tnmd tnmd coding downstream 1799643 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 1900504 14217809 ~ 14230184 (+)
G113860 NA non-coding upstream 3057 12313838 ~ 12314041 (+)
G113844 NA non-coding upstream 23047 12293187 ~ 12294051 (+)
G113843 NA non-coding upstream 27427 12289357 ~ 12289671 (+)
G113821 NA non-coding upstream 160881 12155979 ~ 12156217 (+)
G113769 NA non-coding upstream 291188 12022450 ~ 12025910 (+)
G113868 NA non-coding downstream 60927 12378232 ~ 12378647 (+)
G113871 NA non-coding downstream 63925 12381230 ~ 12381449 (+)
G113872 NA non-coding downstream 64297 12381602 ~ 12381912 (+)
LOC113542795 NA non-coding downstream 90320 12407625 ~ 12412475 (+)
G113880 NA non-coding downstream 107828 12425133 ~ 12425360 (+)
st3gal5 st3gal5 other upstream 48963 12181274 ~ 12268135 (+)
G113831 NA other upstream 53836 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 1427056 10887261 ~ 10890042 (+)
LOC113542793 LOC108269120 other upstream 1460286 10842754 ~ 10856812 (+)
G112653 hmgn5 other upstream 1852825 10458825 ~ 10464273 (+)
LOC113542746 NA other downstream 372329 12689634 ~ 12703994 (+)
LOC117597726 NA other downstream 390704 12708009 ~ 12714731 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 1916413 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 2157652 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 2625044 14942349 ~ 15012384 (+)

Expression


Co-expression Network