G316687


Basic Information

Item Value
gene id G316687
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172875.1
NCBI id APWO02000072.1
chromosome length 1838760
location 725674 ~ 733372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU435916
catttacatttatggtatttagcagacgcccttatccagagcgacttacaacagtgcttcaaagttacttaagatatccaaagctagtttgtagactaggatcaagagatacatagagcttaatcatgttaagaaccctaggaacagattttccgtccaaaatctcaccttgtgttctcagcttaattactcaggaatcccttcacacataaacataatccatatatggttagaaagggcggagcttactctttctaaaaatagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435916 True 266 lncRNA 0.37 2 725674 733372

Neighbor

gene id symbol gene type direction distance location
LOC103035906 NA coding downstream 174515 441434 ~ 551159 (-)
mgrn1 mgrn1,mgrn1b,LOC108257102,LOC107754037,LOC107672503 coding downstream 376898 321283 ~ 348776 (-)
LOC103037130 NA coding downstream 424386 290383 ~ 301288 (-)
LOC103034004 LOC108441797 coding downstream 510142 187720 ~ 215532 (-)
LOC103038104 NA coding downstream 545582 154638 ~ 180092 (-)
LOC103037999 unkl,LOC107550311,LOC107710649,LOC107674636,LOC107565763,LOC106601098 coding upstream 333863 1067235 ~ 1110172 (-)
gper1 gper1,LOC107710646,LOC106601100,LOC107565760 coding upstream 408905 1142277 ~ 1152575 (-)
gpr146 gpr146,LOC107703371,LOC107710650,LOC107565765,LOC107550312 coding upstream 465380 1198752 ~ 1226459 (-)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767 coding upstream 638702 1372074 ~ 1504389 (-)
G316660 NA non-coding downstream 92018 632987 ~ 633656 (-)
G316654 NA non-coding downstream 147044 578297 ~ 578630 (-)
G316635 NA non-coding downstream 172161 472716 ~ 553513 (-)
G316636 NA non-coding downstream 228900 489088 ~ 496774 (-)
G316632 NA non-coding downstream 274872 450445 ~ 450802 (-)
G316697 NA non-coding upstream 75367 808739 ~ 808998 (-)
G316698 NA non-coding upstream 75690 809062 ~ 809659 (-)
G316699 NA non-coding upstream 85031 818403 ~ 818677 (-)
G316700 NA non-coding upstream 96768 830140 ~ 833441 (-)
G316703 NA non-coding upstream 100498 833870 ~ 839109 (-)
G316666 NA other downstream 39792 685568 ~ 685882 (-)
G316656 NA other downstream 142205 583153 ~ 583469 (-)
polr3k polr3k other downstream 311370 410839 ~ 414304 (-)
G316613 NA other downstream 366265 358367 ~ 359409 (-)
LOC103037453 LOC108441796,LOC105890704,LOC103393114,LOC103373143,LOC106527873,LOC101486702,LOC100700722,LOC102788932 other downstream 438416 238908 ~ 287258 (-)
G316753 igfals,LOC108257360 other upstream 298532 1031904 ~ 1036714 (-)
LOC103025754 ube2i,ube2ib,ube2ia,LOC105013396,LOC107677193 other upstream 797682 1531054 ~ 1554186 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G114545 NA non-coding NC_047601.1 CM018547.1 13704145 ~ 13704395 (+)