LOC103035906


Basic Information

Item Value
gene id LOC103035906
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172875.1
NCBI id APWO02000072.1
chromosome length 1838760
location 441434 ~ 551159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022666658.1
CTCCAAGAGCAACAACTTCAGCTCCAGCGGAGTGAACACAGGAGTCCTGCACGCGGCTCGGATCTGATTCGGTTCTGTGTCAGTCACAGTGGGTTTGAGCTCCGGATCCGCCGGGTCAGTGTGAACGACTCATCATGACCTAGTGATCTTCCACAGCATCAAACAGCTGGATCTGGAACGTCTGTGCTGCTTCTGAAACAGACCACGCTCTGAGGTTCCCACCGTCCGCCGGCTCCGCCCCCTGCTTGTTTCCAAGGATACCCTCGTTTCTCCCTCCCCTGAGGAAACATGGAGCCCCAGGGGAGTCTGGGAGCCGGGGAGGGACCGGGGGTCCTGGTTCCGAGCCCCAGGAGCGAAGCCGTGACCCACGACCTGGAGGAGCTGTCCCTGCAGCCCAGCCTGAGCCTTCCCCCCATCAGGGAGCGCAAGAACGTCCTGCAGCTCCGACTCCAGCAGAGACGCACTCGGGAGCAGCTCGTGGAGCAGGGCATCATGCCACctctgAAGACTCCAGCTACCTTCCACGAGCAGATCCGAAGCTTGGAGAGAGCCAGGACTGAAAACTTCCTGAAGCACAAGATTCGCAGCCGGCCTGAACGTGCAGAGCTGGTCCGCATGCACATCCTGCAAGAGACCCAGGCCGAGCCCTCTCTACAGGCGACTCAGATGAAGCTGAAGAGAGCTCGACTGGCCGACGACCTGAACGAGAAGATCGCCCAGAGGCCCGGCCCGATGGagctggtggagaagaacatccTGCCTGTAGACTCCACTGTTACAGAGGCCATCAATGGTGAGGAGGAGTATCAGGACAGGAAGGACGTGTATAACTTTGATGAGGACAGCAGTGAAGCTCTCTCTCCGGAGGATCCAGGCAGTCAGGAGTCTCAGTGCTCAGTCCCGTCCCCAAGAGAGGCTAAACTTCCTGAGATCTCCTCTGCGTCCCAAAGCCCTGCTTCTAATCTACAGtgtgtggtttattttacaGGTGAGGAGGAGTATCAGGACAGGAAGGACGTGTATAACTTTGATGAGGACAGCAGTGAAGCTCTCTCTCCGGAGGATCCAGGCAGTCAGGAGTCTCAGTGCTCAGTCCCGTCCCCAAGAGAGGCTAAACTTCCTGAGATCTCCTCTGCGTCCCAAAGCCCTGCTTCTAATCTACAGCTCTGTCCACCTACTGCCCTGAGCTCAGACTTCCCCTGCAGAACACCAGCGGAGGATCACGCACACGCTCAGCCCGGAGCTGCCACTCCACCAGCCACAGCCACAGCCCCCGCCACCGCCAGGCCTGGCCCCACCCTGCTGAAGCAAACCCAGCCCAAGCCTCCCAGCGAGAGGAGCCGCAGCAAGAAGAGCAAAGAGCCCAAACCCAGAGTGAGGAAGCTGAAATACCACCAGTACATCCCACCCGACCAAAAGCAGGAGCCCAACGAAGCCCCCATGGACTCAGCCTACGCTCGCcttctccagcagcagcagcagttcctCCACCTGCAGATCCtcagccagcagcagcagcagcactacaaCTACCAGACCATCCTACCTGCACCTCTCAGGCCTGTGACCGAGCCTCAGAGCAGCAGCCAGACTCTGCCAGCTCCTGTCGTCCTGTCTCTACCCAGCGCCGCCCCGGCACGCCCCAACCACGCCGTCAACCACCGCAAACCCGGCCCTCTCCCTGCCAACCTGGACGAGATGAAGGTGGCTGAGCTGAAGATGGAGCTGAAGCTTCGTGGTCTTCCCGTCTCTGGCACCAAAACAGACCTCATAGAGAGGCTTAAACCCTACCAGGATACTTCTAATTCCATCAGCCCCCATCCACCTACTGCAACCACGGACACCATCACtccaccaaccaatcagcagctTGAGAGCATGAGCACAACTCCTCCAGTGTCTCCCGTGCGGTCTGAGGTGTCCACTGCCCCCATGGAGGAATCTGTAGCAGGAGACACCACCTCCAAAGCAGGAAGTGCACCATCTCCATCATGGCCGACGGTCGGCACGTCACCCCTGAAGACAGAGGAGATGGAGACCAAAGTGTCGGAGAAGGATCAGCGCCTCCACGAGAAGGAGCGGCAGATCGAGGAGCTGATGCGTAAGCTGGAGCAGGAGCAGCGCCTGGTGGAGGAGCTGAAGATGCAGCTGGAGGTGGAGAAGAGGAGTCAGCAGGGGGCGGCGGTGGCCGAGCAGAACGAGTCCAGCCCCCCCGCCCGGGTCAAAGTGGAGCGTGATGCCTCCCCCCAcagctgcagctccgcccaTGGACCAGCGGTGGTGTCTCCAGCTGTGATGAAGCAGGAGGAACCTCAGGTCCGGGTGCATGCAGTTCCACTGCAGCACTTCTACCTAAACCCTACACCCACCCAGCCTCAGCCAGGACCCCATATCCTGCTACCCACCACCATCCACCTGACCAGCACGTCCCCCTCACCACAGacGCAGCCAGTCCTCCAAACCTCAGCGTCTGACTCGGCCCAAATCAAACCCGCTCCAGTGCAGCGGCTGAAAAGCGAGAGTCCGGCCTTTCAGCAGCTCGCCAGTCAGACTCGCGCTACGCCACAGGTGAGCAGCGCTttttttttttttaagctctcCAAACATTGTGACATGGTTTCCCACTCCAAATGGAGAAAGATCCAGTATATGATTTCATTGTTACAgaatgtttctttgttttcaagATTTTTGCAcagtttcttctcttttcttcctcttcagCAGCCTCCATCTCCCTGCCAGCCCACCTACATCCTCCCACCATCCACATTCTCCAACCACCACAGCCCCAAGAGTAAAGACCCGCCGCGCTACGAGGAGGCAGTGAAACAGACCAGAGCGCTCCAGGCTACAGTTCAGGCTCCCACTGCAACCAGTCAGCACATGGATGACCTGTTTGATGTACTGATTGAAAGTGGAGAAATCTCGCCCCTGATTCGTCAGGATCCTCTCGCCCCGGAGAAGCTCCTGCCCGTGACGGCCAGCGTCACCATGCTTCCCATCAACACTGTACTCTCCCGGCCTCCTCCGCAGGTGCAGGTAGCCCACCCACCTGAGCCCCTGCCCAGCCTGGTGGCGCTGGCTACGGACCACCAGCTGGAGGCGCTGCTGGAGGGCACCCTGTCCGGCGAGGCAGAACCTCGGACCCTCCGCCTGATGGAGGAGCTGCACAGCCAGCTGCTGGATCAGCCCCATTCCCCCATGGACACGGACGAGCTGGCCTTCTCCGACTCGCCGCCTCACTCTCTTCACCTGGACAACATGGAGTGGCTGGACCTGACCGCACCTGGACCTGCCGGCATCTCCGCCACTGCTGGAGTCTTCTCCTCAGACTTCTTAGACTCCCATGACTTACACTGGGACTGAAATGAGGCTTCTGAAGGGAAACCTTGAGAACTATTGACGTCTCAAAACTGGCTCAAAGTTTCAAAACTATCCAGGGAACATTTGTGGGTGAGAAGAACCAAAAGAAGAGAACCACTGGCTTATGGAGAACAAAGCAACCGAGGAGTAGAAATGACCATTGAGGCCATTAAAGCCACTGAAGCCATTGAGACCATTGAAGCCATTGAGGCCACTGAAGCCATTGAGGCCATTGGCCTGGGCTCCAATGGTTAAAGCACTGGGAACGTAGTCTATGGttgcttttccactgcaggatCAAAAGGTTCTGAGCTTCAAACATAAAACTTTAGACACAATTCGGCGCAGAGCGCTTACCAGCCTGCCTGGGCTTAGCATGGTTTTCTTAGCATAGTTTGTGAACTGTTCTTGGGGCCACAGAATACCACATTCAGTGGTATTGGCAAGCCACGCCATGCTAACACAGGTTGCCAGCATGCCAATGCCACGATAGCCTTGTTGAACAATAGCATTTTTGAACCAAAGCTTTGTTTGGGAGATAGAGCTGTTGGACGATAGAGCTGTTGGACGATAGCCTTGTAGGACGATAGCCAGGTCGCCAGTATATAATGGTGTGGAAGCGATGTTGAATGAGCCTGGTTGCCATCATGCTAACACCTTGCTAACAGCATGCTAATGTTGTGTTAATGATGTTGTACAAGCCTAGTCGCTGGCATGCTAACGTTGTGGTAGAGATGTTGTATGAGCCTGGTCgccagcatgctaatgctgTGTTAGCGATGTTGTACAAGCCTAGTCGCTGGCATGCTAACTCTGTGGTAGCGATGTTGTACGAGCCTAGGCACCAACatgctaacgctgtgttagtgACTTTGGATAAGCCTTGCCACCAGCAAGCTAATGCTGTGGTAGCGATGTTGTATGAGCCTGGTCACCGGCATGCTAATGCTGTGTTAGCGATATTGTACAAGCCTGGTCGCCAACATGCTAATGCTGTGGTAGCAATGTTGTATGAACCTGGTTGCCAGCAAGCTAATGCTGTGGTAGCGATGTTGTACGAGCCTAGTCGCCAGCAAGCTAACTCTGTGGTAGCGATGTTGTCAGAGCCTGGTTGCCAGCAAGCTAATGCTGCATTCGCGATGTGCGACAAGCCCGGTCGTGGTACACTAATGTTGGCCGAGGCCTGTAGCTGGCAGGCTAAGGCTGGCCAGGCTGGTAGCTGGTGTGTGCTGGTAGCTTGTTGGAACAAGACTAGACACAATAGATGCCAGCCACTGATTAGACGATATGCTTTTTCTAAACCTGATTAATTAACACCGCAAAttaactgaaaactgaaaaaaatagccatttagtcctgcagtggaaaagaggCTTACCATTGGTCTATCAGTGCAATAATAATCATGGTTCTCTGAAGGTTTCGAAGGGAACTACTCCCTTTTTTTTCAAGACAAAGAAAGAATGTGGGACGTTTTGTACTTTAATTTCCAATCTGTCTgtcagtttgtctgtttttcaCGTGGCTTTGGCAGCTTTCTTACCATGTCTGAAGAGTTTTAGACTTCtagaatgttttaaaagtacgcCTTAgcatatttccttttttacaaTATCAGACGCTCTTAAAGTatatcacactttttttttataaggtgGAGGACATGAGATTAGAAGTAAACGCCACAAGATTTATTGtgcctttgtttttttaacaaactgtgccaaaaaaaagaaaaactattgTAAAAGATTGGTGAATGGCGTAGTCGGCAGACTTTTACATTAGTATTTATACCTTAGAATCTTCTAGTCCTACATTTGGCTTCTTTATTGTGTAGATCAAACTCTTGAATGTCCTTTTAAGCGACTGGATTATCTTCCTAGCCCTAAAAGCTAATATGGCTACACAATGCTGTCTCATACAGATCTAAagcctatctggatgggattagtttagtttttgtgtttttattcctgtccagaacgaccatgtatgtgtgttttt

Function

GO: NA

KEGG:

id description
K22525 MKL; MKL/myocardin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022666658.1 True 5374 mRNA 0.53 17 441434 551159

Neighbor

gene id symbol gene type direction distance location
mgrn1 mgrn1,mgrn1b,LOC108257102,LOC107754037,LOC107672503 coding downstream 92658 321283 ~ 348776 (-)
LOC103037130 NA coding downstream 140146 290383 ~ 301288 (-)
LOC103034004 LOC108441797 coding downstream 225902 187720 ~ 215532 (-)
LOC103038104 NA coding downstream 261342 154638 ~ 180092 (-)
LOC103038423 NA coding downstream 319552 120836 ~ 121882 (-)
LOC103037999 unkl,LOC107550311,LOC107710649,LOC107674636,LOC107565763,LOC106601098 coding upstream 516076 1067235 ~ 1110172 (-)
gper1 gper1,LOC107710646,LOC106601100,LOC107565760 coding upstream 591118 1142277 ~ 1152575 (-)
gpr146 gpr146,LOC107703371,LOC107710650,LOC107565765,LOC107550312 coding upstream 647593 1198752 ~ 1226459 (-)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767 coding upstream 820915 1372074 ~ 1504389 (-)
G316629 NA non-coding downstream 582 440518 ~ 440852 (-)
G316619 NA non-coding downstream 3207 437056 ~ 438227 (-)
G316623 snrnp25,LOC107703331,LOC107674670 non-coding downstream 18093 415792 ~ 423341 (-)
G316621 NA non-coding downstream 33879 407002 ~ 407555 (-)
G316620 NA non-coding downstream 35851 399016 ~ 405583 (-)
G316654 NA non-coding upstream 27138 578297 ~ 578630 (-)
G316660 NA non-coding upstream 81828 632987 ~ 633656 (-)
G316687 NA non-coding upstream 174515 725674 ~ 733372 (-)
G316697 NA non-coding upstream 257580 808739 ~ 808998 (-)
G316698 NA non-coding upstream 257903 809062 ~ 809659 (-)
polr3k polr3k other downstream 27130 410839 ~ 414304 (-)
G316613 NA other downstream 82025 358367 ~ 359409 (-)
LOC103037453 LOC108441796,LOC105890704,LOC103393114,LOC103373143,LOC106527873,LOC101486702,LOC100700722,LOC102788932 other downstream 154176 238908 ~ 287258 (-)
G316656 NA other upstream 31994 583153 ~ 583469 (-)
G316666 NA other upstream 134409 685568 ~ 685882 (-)
G316753 igfals,LOC108257360 other upstream 480745 1031904 ~ 1036714 (-)
LOC103025754 ube2i,ube2ib,ube2ia,LOC105013396,LOC107677193 other upstream 979895 1531054 ~ 1554186 (-)

Expression


Co-expression Network