G316619


Basic Information

Item Value
gene id G316619
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172875.1
NCBI id APWO02000072.1
chromosome length 1838760
location 437056 ~ 438227 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU435834
TCAGATTACTGACTATTAGATTTTCTGCAGGTATCAGATTATTGACTGTATGTTAACATATTAATTGGAATTACTGAGAGAATCTGATTTTCTGCAGTTATTCGATTTTAAGTACATGTAAACATGTTAATTGGATTAGAggcaaaataacattttatgcaGTTATCAGATTTTAACAAGTGCATGCGAAGGCATTGATTGGATTAGTGGCAAAATAAAATTCTCTGCAGATGTCAGATCACTGACTGTATGTTAACACATTGATTGGATTAGTGACAGAATCTGATTTTGTGcatttagtaaactttaacaaGCACGTGTAAGTGCTTTGATGGCAGAAAATCAGACTCTGTTAGTAATTTCAGAGATACGATTGAGTGCATGCAAATGCATTGATTGGATTAGTGGCaaaatctaattttctgcagttatcagatttttttcatggcttactgacagtgttttttttacgaATTTATTGGATTAATGAGTGCAGGTTGATCAGATTACTGACAAAATGATTTTTTGGCAGATATCAGATTAATAACTGCGTGTTCACATGTGGATCAGATTACTGACAGAATCTGATTTTATGCAGTGATTGGATTGTTTAGATTAATATAATTCCTAatcattttggagtatttctattggtccgttcctCGTGAAATTTGGACACAATTTACATTGtgccaaaaagtaaaaaatataaactggAGATACAAGATTTTTGCATGAAAGTGATAATAAACACTATGAACAGACAGATCTAGTCCCTGTGCAGTATTGCCAGTAGAATAGGAACACTCTGAGGCAGATAAACATTACAGTAGGACATTCCTTAAAAATAACCAAATGTCTTTGAGGCTTGAGGTATATTTGAACATTctgcaatatactgtattgtatttgttATTATATGAGTGAATATTAAACCTGCCGTGCCGTTTATTACAAATAGGATCAGATTTAAAGCTCATTGAGAACCCAGTTGACCCAGTTCTGTAGAATCTAGTacctttattttgtattTTGACTCTGTAGACTATGAGAGCACATCTTTCTGcacagtgtaaatatttattccttttttacGAGAGCGCAGCACGAGGAAATGTGCAGCTGTAAataatgaagtttggaggttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435834 True 1152 lncRNA 0.33 2 437056 438227

Neighbor

gene id symbol gene type direction distance location
mgrn1 mgrn1,mgrn1b,LOC108257102,LOC107754037,LOC107672503 coding downstream 88280 321283 ~ 348776 (-)
LOC103037130 NA coding downstream 135768 290383 ~ 301288 (-)
LOC103034004 LOC108441797 coding downstream 221524 187720 ~ 215532 (-)
LOC103038104 NA coding downstream 256964 154638 ~ 180092 (-)
LOC103038423 NA coding downstream 315174 120836 ~ 121882 (-)
LOC103035906 NA coding upstream 3207 441434 ~ 551159 (-)
LOC103037999 unkl,LOC107550311,LOC107710649,LOC107674636,LOC107565763,LOC106601098 coding upstream 629008 1067235 ~ 1110172 (-)
gper1 gper1,LOC107710646,LOC106601100,LOC107565760 coding upstream 704050 1142277 ~ 1152575 (-)
gpr146 gpr146,LOC107703371,LOC107710650,LOC107565765,LOC107550312 coding upstream 760525 1198752 ~ 1226459 (-)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767 coding upstream 933847 1372074 ~ 1504389 (-)
G316623 snrnp25,LOC107703331,LOC107674670 non-coding downstream 13715 415792 ~ 423341 (-)
G316621 NA non-coding downstream 29501 407002 ~ 407555 (-)
G316620 NA non-coding downstream 31473 399016 ~ 405583 (-)
G316558 NA non-coding downstream 117951 316609 ~ 319105 (-)
G316604 NA non-coding downstream 141111 292919 ~ 295945 (-)
G316629 NA non-coding upstream 2291 440518 ~ 440852 (-)
G316630 NA non-coding upstream 8885 447112 ~ 449251 (-)
G316632 NA non-coding upstream 12218 450445 ~ 450802 (-)
G316635 NA non-coding upstream 34489 472716 ~ 553513 (-)
G316636 NA non-coding upstream 50861 489088 ~ 496774 (-)
polr3k polr3k other downstream 22752 410839 ~ 414304 (-)
G316613 NA other downstream 77647 358367 ~ 359409 (-)
LOC103037453 LOC108441796,LOC105890704,LOC103393114,LOC103373143,LOC106527873,LOC101486702,LOC100700722,LOC102788932 other downstream 149798 238908 ~ 287258 (-)
G316656 NA other upstream 144926 583153 ~ 583469 (-)
G316666 NA other upstream 247341 685568 ~ 685882 (-)
G316753 igfals,LOC108257360 other upstream 593677 1031904 ~ 1036714 (-)
LOC103025754 ube2i,ube2ib,ube2ia,LOC105013396,LOC107677193 other upstream 1092827 1531054 ~ 1554186 (-)

Expression


Co-expression Network