G316635


Basic Information

Item Value
gene id G316635
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172875.1
NCBI id APWO02000072.1
chromosome length 1838760
location 472716 ~ 553513 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU435857
ttgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcaatgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaactgtgattaaaaaccaccagggttattccaccaaatattgatttctgaactcttaaaactttatgaatatgaacttgttttttctttgcattatttgaggtctgaaagctctgcttctttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435857 True 296 lncRNA 0.35 2 472716 553513

Neighbor

gene id symbol gene type direction distance location
mgrn1 mgrn1,mgrn1b,LOC108257102,LOC107754037,LOC107672503 coding downstream 123940 321283 ~ 348776 (-)
LOC103037130 NA coding downstream 171428 290383 ~ 301288 (-)
LOC103034004 LOC108441797 coding downstream 257184 187720 ~ 215532 (-)
LOC103038104 NA coding downstream 292624 154638 ~ 180092 (-)
LOC103038423 NA coding downstream 350834 120836 ~ 121882 (-)
LOC103037999 unkl,LOC107550311,LOC107710649,LOC107674636,LOC107565763,LOC106601098 coding upstream 513722 1067235 ~ 1110172 (-)
gper1 gper1,LOC107710646,LOC106601100,LOC107565760 coding upstream 588764 1142277 ~ 1152575 (-)
gpr146 gpr146,LOC107703371,LOC107710650,LOC107565765,LOC107550312 coding upstream 645239 1198752 ~ 1226459 (-)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767 coding upstream 818561 1372074 ~ 1504389 (-)
G316632 NA non-coding downstream 21914 450445 ~ 450802 (-)
G316630 NA non-coding downstream 23465 447112 ~ 449251 (-)
G316629 NA non-coding downstream 31864 440518 ~ 440852 (-)
G316619 NA non-coding downstream 34489 437056 ~ 438227 (-)
G316623 snrnp25,LOC107703331,LOC107674670 non-coding downstream 49375 415792 ~ 423341 (-)
G316654 NA non-coding upstream 24784 578297 ~ 578630 (-)
G316660 NA non-coding upstream 79474 632987 ~ 633656 (-)
G316687 NA non-coding upstream 172161 725674 ~ 733372 (-)
G316697 NA non-coding upstream 255226 808739 ~ 808998 (-)
G316698 NA non-coding upstream 255549 809062 ~ 809659 (-)
polr3k polr3k other downstream 58412 410839 ~ 414304 (-)
G316613 NA other downstream 113307 358367 ~ 359409 (-)
LOC103037453 LOC108441796,LOC105890704,LOC103393114,LOC103373143,LOC106527873,LOC101486702,LOC100700722,LOC102788932 other downstream 185458 238908 ~ 287258 (-)
G316656 NA other upstream 29640 583153 ~ 583469 (-)
G316666 NA other upstream 132055 685568 ~ 685882 (-)
G316753 igfals,LOC108257360 other upstream 478391 1031904 ~ 1036714 (-)
LOC103025754 ube2i,ube2ib,ube2ia,LOC105013396,LOC107677193 other upstream 977541 1531054 ~ 1554186 (-)

Expression


Co-expression Network