LOC113528898


Basic Information

Item Value
gene id LOC113528898
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13017573 ~ 13021651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403005.2
ttggtgtttgtttttatagaaGAAAGCtcttctttaaaaatgtgttggtATCAGCTGGATATGAAGATGTTaacttgtttattttgtttgtcttttatattttttacgtCTTGAAACTTATTGCCAGAAATGTCCAGTGTGTGGTCTTGCATACCATTATCAAGAATGTAACACTGGTGTGCATAACTATGATGATGACATCAGTCTGAAGTTGTCTTATACTTCGAAGTTTTATGCAGTCTCACACTGCTGTTGAAAGGGTCTGCAAAGCTTTTTCAATAGCCACTGGAACTGCTTACCCAAGCAGTAAAAAAGTGCTTTGTGCAAAGATGCACTTTGACACATTAACAGATCATAACTACAACTTTTCTTGTTTAAAGTGTGGGTTACATCCACCTATTGTTATCACAGATGTCCATCGAAAAGGAGTTTTTAGTATGCCAGgtGGAAGTCACAATCCATCCACTGCCAACCCAAATTTCCACTTTTGGAAGATGCACTAGAAAGTCTGGCTCTGTTTTAAATACAGAGTGGGAGAAAGTGCATACATCAAATCTCATTCTGTATCTGAACTTCTGAACTAACTGGCTTGTTGATGAGCTGATCACACTGAAGgtGTCTGGTGTCCGACAGTTATGTAGATCTTGTGGGTTAAATACGAAGGGATCAGAGATGGACCTCATAATGAGACTAAGGAATGAAATGCAAAGCAGGTCATCGTATGACAAAATTTTCCAGAAGGTTTGAAGTGCATCAGgtAGTTGGGCAGTTGTTATGTGCTCCTGCAATGTGGTTTACAGCGTTAAAGTCCTGTTGAGGGCTGAAAGTCCAAGGGACTTCACCGACCTTTTGCTGTCATGGAAACACATTCCCAATATAACAGTTTATGATTCTGCATGAGGAGTAGTCACTCATTCAAATCTCTGGTATCCAGATATGATTCCCTTCAGTCCACATGACAGTTGACTTCTGGAGCCAAATGAGGCTAatattacagcagcagaagaggGAAAACTGAATCTTTAACATGGCTTAAAGAGAAGAAGGTGCCAGCTAACTTGAATGGACATCCTTTGACTGGCTCATCCGAACACTATGTTCTCTACGACAGGTTCCATGAGAACAATACTAAAGATTCCCATGATAAACTTGAGAAAATACAGCTTGTGCTTGAGGTGGCTGGAAAAGTTAATTCTCAGTGTGCTGAACAGTTGTTTtctcaaatgagaaaaaaacaactactTTTTACGAAGCCAACAAACCATGTGTTCCTCATGAGAAACATGTTGCACCACTACAATGTAAACAGAAACAACAGATTGTTGGAACAACTATCAAACCATATTGGTTGCACTCAGATTGTTCTGGACTTGGTGAATATTatgtggtttaattttttatattatttttagtttcattagcatttttgaatcaactttttcaaaaatgttaattattattgGTATGGCATGTTGACGTGTTTTCTTTATTACTTGATTACTAGGGACTTCAtatgaaaacacatttacagctgAAAAGTTGGCTGTGACAGGGCTGAATGATGTAATTCCCAGCAAGACTTGCTAGGAACAACCATTCAGTGAAGCAATGGAGGCAAAGCTAACACATAGAATTAGACACGCAGAAAAATCCAAGTGAACATGTTGGAGGTGTTTACCACTCTGATGCAAGAAGATTTTCAGGGGTTGGGATTGCAGCGTGATATTGAAGGGACATTTAGTATAATATTTGTCTTTTTGATCTCATTAAATTTTGTGAATAGTCTGTTTCGGTCTTAAGAAGCTGTGGTTTCGCAAGATTCTGAGTTGCTGTTTCAAGGTGGTTGAagacatgtgtatgtgtacaaaAGTGTGGACATCCAATAGCTATGTCACAGCAACTTGGATTCCTCCAGTTTGTGCAGATCCAATGGTACATATGGCTataagtatttattatttgttggaACAGTGTAACTGGTAATGTTTTAGATATGGTTGGTTGTTCTGGATTATCACaatgcttttcatttcattcagtgtTCTGAGCTGTAGTTGAAACAATGCCATATCAAATCTAATTTTGTATAGAAGTTGTAGTACACAATCTGTCAAagcagttaaaaacattttacagcccACATTGTGCATAATGCATATATTTTCACTCTGAATTGTGttaatttatgttttgtgaaagGTTGATGCTTCTGTAAAAGACTTCATTTTACTTCCTACGTGGAGCAAATCACACTGGAACATTTGTCTAAGTCATCAGTTTAATACATAATTTTATAACAAGATTTGTCATATTGGTGTCTGTATCTTCTGTGTATTTTGGTAACCTTTTTCAGATTCTGTATTCAAAGCTGAAACAAGATTGGTCTAAGTGATGGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403005.2 True 2399 lncRNA 0.37 6 13017573 13021651

Neighbor

gene id symbol gene type direction distance location
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 649336 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 866409 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 1057545 11950411 ~ 11960028 (+)
LOC113542778 NA coding upstream 1101096 11863839 ~ 11916477 (+)
cx31.7 LOC108268987,LOC108436706,LOC107688616,LOC107746179,LOC107564189,LOC107674867,LOC107724542 coding upstream 1175516 11839808 ~ 11842057 (+)
diaph2 diaph2 coding downstream 44253 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding downstream 309136 13330787 ~ 13330858 (+)
tnmd tnmd coding downstream 1095297 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 1196158 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 1398137 14419788 ~ 14419861 (+)
G114268 NA non-coding upstream 7502 13006515 ~ 13010071 (+)
G114250 NA non-coding upstream 110360 12906957 ~ 12907213 (+)
G114244 NA non-coding upstream 112691 12887208 ~ 12904882 (+)
G114241 hspa9,LOC100304872,LOC107674872 non-coding upstream 134447 12878689 ~ 12883126 (+)
LOC117597727 NA non-coding upstream 289714 12726799 ~ 12727859 (+)
G114304 NA non-coding downstream 35958 13057609 ~ 13058192 (+)
G114319 NA non-coding downstream 38496 13060147 ~ 13060538 (+)
G114322 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 non-coding downstream 40108 13061759 ~ 13063948 (+)
G114326 NA non-coding downstream 101094 13122745 ~ 13134368 (+)
G114330 NA non-coding downstream 293447 13315098 ~ 13315503 (+)
LOC117597726 NA other upstream 302842 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 313579 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 749438 12181274 ~ 12268135 (+)
G113831 NA other upstream 754311 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 2127531 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 1212067 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 1453306 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 1920698 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 2029664 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 2032433 15054084 ~ 15055490 (+)

Expression


Co-expression Network