G1490


Basic Information

Item Value
gene id G1490
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 2771787 ~ 2820355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU1829
TGAAACATCGTTTTAATAAAATGAGCATTTTAAATTATTGCCTGCACCCAAAAACTCTTATGACAATGATCCTTTATCTTAACTGCATGCACATGATGATATCCACAACCCCATCGCCTTAGCACAGCTTTGAGTAGTGATCTAGATGCCATTTGTCTAACCTTCAACCAATAATCAGTgttaaatggggaaaaaaaaaaaaaaaacaactgaggTACAGGTTTTAAACATACAGAACTGCTACCAAAAATCCTAACTGTGCTACATATGGCATGTGTTGAATAGAATCTGTACCCGGTGCTTTATATGCTACTGCAATGATTGCTGTTAAATTTAAGATGGATAAGACATGAGGTGCTTTGGATGACACTCCAGGCTTTCAAAAACCGCCATGTTTCCATGACGACCAACAGTTTACCACCCACACCACATTTAGTATTGGCTTCAGTCCTTCACTCCATCCCACATACACACCGTTTTCAAAAACGGGTTGCTAACCAAGCACATTATGTTCTCTTATTTTCAGAGATGTTCttcaatttcctttttttttttttttatattttactctcAGGTGACCTTGTTCTGGTGGACGGTGAATGTCAGcccttttattaaaaaaagaaagaaaaaaaaaaaggacaacaaTAAAAAGTACATACCATTTGGTAAGGCCTCTTTCTGCAGTGAGTCCATCACAAATGTTTCCCACAATCATGAAAAAGGATGAGGAAGCTAATCACTGATCATTTGTTTTTTGAATGCGTAATGAGGGGTtgcattaattaatacaaaaaggttttttttaatgaggcaaaaaaaaaaatcctcattcTCTTTACAgtctttttataaatacagacacactAAAGCTCCAGGTTCTTCTGTATGTGTACTCTTAGCATTGTCCCAACTACAACTGATTTCAATAAAAGGTACATTGGCTTCTATacaataaaagggaaaaaacaggACATCAGTAAAACTCAAGAAAAGTCAGTGGATTCCAAAACTGATCGCTGAAGACATGATGGGAAAAAATGGCATGTTGAACTGGGAATAAAAACGATGAAAGATACTAGTGGAGGatcatttgtatgtgtgtgtgtgtgtgtgtgtgtgggtgttttttttttttgtttgttttttgttttttcctggttAGAGGTTGGGATTTGCGAGTTACAGCTAGTCAAACGTGGTACAatttacaaactgctcctttaaagaACTTAAGATATCATTATAGTGCCATGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1829 True 1259 lncRNA 0.35 2 2771787 2820355

Neighbor

gene id symbol gene type direction distance location
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854 coding downstream 333072 2424751 ~ 2438715 (-)
rspo3 rspo3 coding downstream 445248 2313109 ~ 2326539 (-)
cnih4 cnih4,LOC107703927 coding downstream 472721 2294849 ~ 2299066 (-)
preb preb coding downstream 509456 2253256 ~ 2262331 (-)
LOC113526881 LOC108269985 coding downstream 616609 2151756 ~ 2155178 (-)
sybu sybu coding upstream 3034 2823389 ~ 2834898 (-)
trhra trhr coding upstream 138902 2959257 ~ 2964620 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding upstream 184942 3005297 ~ 3036104 (-)
tpbgb tpbg coding upstream 537870 3358225 ~ 3360489 (-)
bckdhb bckdhb,LOC106605051 coding upstream 637462 3457817 ~ 3508921 (-)
G1469 NA non-coding downstream 38446 2731416 ~ 2733341 (-)
G1465 NA non-coding downstream 65951 2702814 ~ 2705836 (-)
G1421 NA non-coding downstream 115488 2613257 ~ 2656299 (-)
G1425 NA non-coding downstream 132084 2590485 ~ 2639703 (-)
G1422 NA non-coding downstream 218229 2548778 ~ 2553558 (-)
G1576 NA non-coding upstream 158507 2978862 ~ 2979141 (-)
G1580 NA non-coding upstream 183440 3003795 ~ 3004003 (-)
G1583 NA non-coding upstream 227611 3047966 ~ 3048344 (-)
G1594 NA non-coding upstream 264572 3084927 ~ 3085344 (-)
G1708 NA non-coding upstream 357208 3177563 ~ 3177769 (-)
hint3 hint3 other downstream 320267 2440846 ~ 2451520 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 371530 2388648 ~ 2400257 (-)
G502 NA other downstream 2172621 598781 ~ 599166 (-)
spag1b LOC108262752 other downstream 2584940 124362 ~ 186847 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 97868 2918223 ~ 2919847 (-)
G1718 LOC108270367 other upstream 423480 3243835 ~ 3281162 (-)
G2011 tmem158 other upstream 837825 3658180 ~ 3659319 (-)
clec3ba clec3b other upstream 849314 3669669 ~ 3673964 (-)
G2020 NA other upstream 853891 3674246 ~ 3675836 (-)

Expression


Co-expression Network