tpbgb (tpbg)


Basic Information

Item Value
gene id tpbgb
gene name tpbg
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3358225 ~ 3360489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913366.2
AGCGGAGCTGGAATCTGAACTCGACAGGAGTCTGCGATGTGTCCAAGGCGCTGACATGAAAATCCGAAAAGAGCCCAGAATTCATCAAGGAAATGAAAAACTCCAAAGTTTCTGGATACACGTCCCCGCTCCCGAGCGTGTGAAACCTGGCCGTCTTCCGTCCTGGAGGTGAATTGGCGACAGATGTGCGgaggtgagagtgagagtgagattGAACTTTTTTTTGCCTGAACGCAGGAATGAGCGGCGTCAGTGCTGGAGCCGCACGCAGAAGACGATTCCCGGCGGCTATGTGAACCTCAGAGCCGTGTGGACAGCTCTCTGTGCTATttgcatggttttttttttttggcttctgtTTGCAACTACGTAAGACAAAAGTGTGCCGAGAAGAAGtggaaggaatgaaagaaagagttcAGCGGAATTCCGAGTAAACGCAGAAGGTGTAGGTTTCAGACTTGGGTGAATTTGTGCGCGCGGTACAGTTGCAGTGCAGCGCTACTTTTCCCGACGGCGGCGGAAAGGCGGGCAGAGATGCGTGCAGCAGGCTCGCTGCGGGCGCTGCTACTGAAGGAGAAGCAGGCCAGGCGGCGCGTCTCCACTCCGTGCGTGGTGCTTTTCCTGACGTGCTTTGGCACTGCTGCTGCGTCTCTGGAATGCCCTCACCAATGCGTGTGCACAGGCACAACAGTAGAGTGCAATCGCCAGAACTTAACATCCATCCCACAGCCAATTCCAGCCAACACAACGACCCTTCTCCTCACTGGAAACGATATATCCCATCTAACCGAGGAGTCCTTCCCTGTTCGCCTGGACTATCTGGCAGAGCTTTATCTGCCTGAAAACCGAATAGAGCAAGTGGCCCCTGGGGTGTTTGACAGCTTGCCAAGGCTCCGTCTGCTTGACCTGAGCAACAACAGAATCTGGAATTTTAGCCCTGATGCTTTTCCAGAGCACAATATGCTCCAGGTCTTAAACCTGAGCGGATCATTGTATAATTTCTCCTATACTGATGTTTTTTGTAACCTTTTAAAGCACGCTGTTCCTAAACTTTCCAATCTCAGCTTGGCAAACAATGACCTTGTCGTCCTTCCAGACGACATGTTCACCAGCTTGTCGGACCTCACCACCCTGGACCTGAGAAACAATTCAATAGTTTCAATTAAGAACGTGACTTTCCGAAACAACGCGCTTATTAGTTTGGACCTGCGGAACAATGCTCTGAAAGAGCTGTCTAATGGGACGTTAAAGGAGTTCAACCAGATACCTGGGCTTCAGCTGTACCTGCTGGGAAACCAGTGGGTTTGTGACTGCAACATTGAGGACATGGTGATGTGGTTACAGAGCTCAGATGTTGTTGTGGACAAGCAGCACATGACCTGCACTCAGCCGGAAAAACTGAGAACCAGTCAGCTCTTGCAGTTGAAGCATTCAGAGCTGCAGTGCACCGACTCTGGAAACATGGAGGTTACCCTGGAGACCTCGTATGTCTTTCTGGGTATGGTGCTGGCCCTCATTGGGGTCATATTCCTGCTAGTCCTTTACCTGAACAGAAAAGGCATCAAGAGATGGATGTATAATATCCGTGATGCATGCAGGGACCACATGGAGGGCTACCATTACAGGTATGAGATCAACTCGGATCCACGCCTGGCCAACCTCAGTCTTAACTCGGATGTGTAAGGAGGTGTGGTGCTTGGCTGGAGATGGGGAAAAGAGTTTCCCACAATTACGCACAGTGACTCAGCTCTACGTTTGCATAGTTTTCACAAGCTTATACTGTAATATGCAGTTTGCCATGCCAGATAGATTAATTGGCGTCTGCTGCGGTACACGCCGCATGCTATGTTATGGTGTGTCTTGTTTAGATGTTGTTCAACGCTTGCATGAATCAAGAACTCATAAAGGTACATAAGTGCTTCTTTCTTCTAAAAGAAATCTACATATGATACTTTGGGACAGTGTGAAGTATGATGCAAGGATCTCTCTAATGGATGCAAGTTGTGCATATTATCTTGCTTgcaaaatgactgaaatgaagAATTATACATGTCTTAAATCTCATTAATGCTTGACTTTTTTCCCTTGAATAATAAGTTAccatgtttgcatgtgtttatgtaCTTTTTCCAGTGGTTATAATATCATAATACTCACATATACTTATCACAGCTGTCcatttttatattcacatttgTTCCATTGACATGGCTTAACTTTTCTTATGAATATGTTCTGCTGAATAAAAAGGTCTTGCGTTGA

Function

symbol description
tpbg Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within several processes, including dendrite arborization; olfactory learning; and positive regulation of intracellular signal transduction. Located in cell surface.

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913366.2 True 2265 mRNA 0.47 1 3358225 3360489

Neighbor

gene id symbol gene type direction distance location
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 322121 3005297 ~ 3036104 (-)
trhra trhr coding downstream 393605 2959257 ~ 2964620 (-)
sybu sybu coding downstream 523327 2823389 ~ 2834898 (-)
zdhhc3a zdhhc3,zdhhc3a,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding downstream 553306 2795611 ~ 2804919 (-)
kiaa1143 kiaa1143 coding downstream 567504 2788192 ~ 2790721 (-)
bckdhb bckdhb,LOC106605051 coding upstream 97328 3457817 ~ 3508921 (-)
ttk ttk,LOC107559022,LOC107569443,LOC105908890,LOC105419921 coding upstream 151695 3512184 ~ 3522575 (-)
dctn3 dctn3,LOC107726235,LOC107713912,LOC107689028,LOC107569444 coding upstream 163391 3523880 ~ 3528873 (-)
limd1a limd1,LOC106579350,LOC106605519,LOC107598949 coding upstream 206824 3567313 ~ 3591471 (-)
lars2 lars2,LOC107598928 coding upstream 236026 3596515 ~ 3648014 (-)
G1708 NA non-coding downstream 180456 3177563 ~ 3177769 (-)
G1594 NA non-coding downstream 272881 3084927 ~ 3085344 (-)
G1583 NA non-coding downstream 309881 3047966 ~ 3048344 (-)
G1580 NA non-coding downstream 354222 3003795 ~ 3004003 (-)
G1576 NA non-coding downstream 379084 2978862 ~ 2979141 (-)
LOC117596928 NA non-coding upstream 3371 3363860 ~ 3366240 (-)
G1984 NA non-coding upstream 234199 3594688 ~ 3594945 (-)
G2017 NA non-coding upstream 310403 3670892 ~ 3671182 (-)
G2019 NA non-coding upstream 315976 3676465 ~ 3679564 (-)
G2241 NA non-coding upstream 674305 4034794 ~ 4035081 (-)
G1718 LOC108270367 other downstream 77063 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 438378 2918223 ~ 2919847 (-)
hint3 hint3 other downstream 906705 2440846 ~ 2451520 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 957968 2388648 ~ 2400257 (-)
G502 NA other downstream 2759059 598781 ~ 599166 (-)
G2011 tmem158 other upstream 297691 3658180 ~ 3659319 (-)
clec3ba clec3b other upstream 309180 3669669 ~ 3673964 (-)
G2020 NA other upstream 313757 3674246 ~ 3675836 (-)
nagpa nagpa other upstream 608903 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1520314 4880803 ~ 4889598 (-)

Expression


Co-expression Network