G2017


Basic Information

Item Value
gene id G2017
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3670892 ~ 3671182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU2453
TTCACTTCTAGGTTGTAAaactacaaaatatggaaaagttcaaggggttgaatacttatgcaaagcagGTCTACGCTATGTACTTTCATTCTTGTTACTGTTTAAGGTAAATCATGGTGAATGGAAGGGGTGCTGCGGCAGCACCATCATTTCCCACCTCACTGACTGTAATTGTTACTCTCACATTGTAAGTCACACTGTTTCTAGAGCCACAATATTTCGTCCAACTGTATACACCTGTCTGGATAGAAGCCAATAAAACTGATGTTAAAGTATGAGCCTGAGTTGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2453 True 291 lncRNA 0.39 1 3670892 3671182

Neighbor

gene id symbol gene type direction distance location
lars2 lars2,LOC107598928 coding downstream 22878 3596515 ~ 3648014 (-)
limd1a limd1,LOC106579350,LOC106605519,LOC107598949 coding downstream 79421 3567313 ~ 3591471 (-)
dctn3 dctn3,LOC107726235,LOC107713912,LOC107689028,LOC107569444 coding downstream 142019 3523880 ~ 3528873 (-)
ttk ttk,LOC107559022,LOC107569443,LOC105908890,LOC105419921 coding downstream 148317 3512184 ~ 3522575 (-)
bckdhb bckdhb,LOC106605051 coding downstream 161971 3457817 ~ 3508921 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding upstream 15233 3686415 ~ 3699107 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding upstream 37345 3708527 ~ 3719445 (-)
LOC113526447 tdp2,LOC108261898 coding upstream 71959 3743141 ~ 3748625 (-)
aldh5a1 aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105 coding upstream 90325 3761507 ~ 3769399 (-)
dek dek coding upstream 99727 3770909 ~ 3780114 (-)
G1984 NA non-coding downstream 75947 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 304652 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 493123 3177563 ~ 3177769 (-)
G1594 NA non-coding downstream 585548 3084927 ~ 3085344 (-)
G1583 NA non-coding downstream 622548 3047966 ~ 3048344 (-)
G2019 NA non-coding upstream 5283 3676465 ~ 3679564 (-)
G2241 NA non-coding upstream 363612 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 400043 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 629706 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 713990 4385172 ~ 4385378 (-)
G2011 tmem158 other downstream 11573 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 389730 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 751045 2918223 ~ 2919847 (-)
hint3 hint3 other downstream 1219372 2440846 ~ 2451520 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 1270635 2388648 ~ 2400257 (-)
G2020 NA other upstream 3064 3674246 ~ 3675836 (-)
nagpa nagpa other upstream 298210 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1209621 4880803 ~ 4889598 (-)
G2709 NA other upstream 1229704 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 1308474 4979656 ~ 4986710 (-)

Expression


Co-expression Network