LOC113526375


Basic Information

Item Value
gene id LOC113526375
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 4979656 ~ 4986710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913346.2
CAGCAATCAATTGCTTGCCAGCccacataaaattaaaacctaaagaagaagaaggaggagaaggagcaggaggaggCGGAGGAATAGCTGTGTGAGTGGCTCTAGTAATAAACTAATCATGGAGGCAGCAGACTCGTACTTTCATGTTGAGCTCACGGCTGTTGTTGACGGCTTGCTGAAGGCGGCGGTGGTGGAGATCTGCGCTCtggcagacagatggagagatgatTTACGCATGGAGATAACAACGAGCAGATCCGAGAATGAACAGTTAAAGCGCAAACTGCAGATTATGGAGCAGAGCCTTTCTGCATCTCGGGTGGCCCAGTCGAAGAATGTGGGACATCAGGACAAAAAGACACAATTCCCTGAGGTTGGCACCAATCCTACCGACGattgTGGAAATGTGGAGACTGAACTCACAGTTCCCAAAGGAAATCCGTGGGTGCAGCAGTGTAGCTTTCTACCAGGTGTAATAAAAGTGGAAGCAATGGATATATCTGTTACTGCCAAAGCAGGGGAAAGACTATATGGAAAATGCAGTAATGTACTTCATCCACCTCATTACACAAATACAAGCAATCAGCTTCTAGAATTTAAGACTGAACGTAAGAGCAATACTGAACCAGAGGTCCAAATGCCAGAAGCTGTGAGCAGAGAAGACATCAGTACAGAATGTGAAGTGGAGACTCAGGATTCTGCAGCTACGGATGGAGAGTGTGAGTCCGTGAATCAGAAAACTCAAAATGTCCACTTTACTCgaactaaaacaaaaaaggaggaTGATACCAAGGGAGTTGAGGTGATAGAGGGAGTTTTTCCATCAGCTTCTATGTCTTTTCTTAATATCTCGGAACCATCGACCTCCGATTGTTCAGTGTGTGTAACACTGGGAGAAACAGCTGAAGTATCCACACTGCCAAGAAAAGCTAAATATTCTAAGAAAAAATCCAAGAACTCCCAAGATGctttgcagagaaaaaaaaagaaaggtctCAGATTCATTTGTCACATCTGTGGGAAAAGTCTTTCGACAAAATATTCTCTGAAAGTTCATTTAACACTTCATACTGGAGACAGGCCACATGTGTGTACTCAGTGTGGAAAGagattttttaacaaaactaaCCTTCAAATCCACCAGAATATCCACACCGGAGAGAAACCGTACGTCTGCACTCTCTGCCCGAAATCATTTTCCGACCCGAGCCCTTTAGCAAGACATGAGAGGATGCACGGAAGAGAACTAGAGGAGAAACACAGTCCCAAGCCTAAATTTATGTGTAATATCTGTGGGAAAATCCTTTCAACAAAACACGGATTGACATACCACATTACAGTGCATACTGGTAAAAGACCTTTTACATGTACGtggtgtgggaagagttttgtTCTAAGAAGCAACCTACTGATCCACCAGAATATTCACACTGGAGCAAAACCATATACCTGCACTCTGTGCCAGAAGTCTTATGCTGACCCCAGCAGTCTTACAAAACATAACAGATTGCACAAGTAGTAAACTTGCAAACTTTCAAACTTGAGTTATTACGAGTGAGACATTTTGATAGAAATCCTCTTCCATTTTATAGTACAGTAATTCCCTGGTCAACGTTATTCCATTATCTTTATACAATGCAGTAATTATAGTTTATAGGataaatagttttttaatattttgttgataAATTGCTtatcaacaataataatcatgttACTTAATGCTATAGCAgtaacatgtaaaataaaattgaaagtTCATTTTAGAGGCGTGTTGGTTTACAGTGAAGCTGGTGGATTCCAATCTTTAATattctttcagatttttttggtgaaaaataaaaaaagcacttgTTTTGCATGACTTGGCCATGGCTTTGACGGCTTCTCCATTCATCAACATTTTATGTCTGTTTCTACTGATTTATGTTCCATGCTTGATTCAGGTAAttgaaaaaaaacctttataaatttttatttgagtgaaataaaaagaacatttgtgtttaaagatattttaatatctcTATGTTTACATTATACCAATTGAATAGAGATGATCATACTGTATGATGTATgctatcatttatttaattttcatgaaCTGCATTCTGAGTCTATGCTGGGAGCAATGGGCATGAAGTGGGAATAGAcgctggatgggatgccaggaTATCGCAGGACAAATACATTCAGACACTTGTTCCACATCTAGGCGCAATTTATCGTAGCCAAACCACCTATTGGCACGGGAGGTAAGATGAGACccgagaacctggagaaaacctaCAGGAACACGGAGACCTTGCAAAACACCATACCgagagtaacccaagctcaggattgaactagAGTCCTTGGAGCTGTCAGTGCTACCTGCTGTGTTCCTGTGCCACCTTCCTAGGATCTAcgctataaggccaaaagtatgtggatacctgaccatcacacccaaatgtgggTCTTCCCacattgttgccacaaagttgcaAGCATAGACTTGTACAGAATGTCTGTATATGCTGTAGCACATGGGTGTCCAATCTTAGCcagaaagggccagtgtgggtgcaggttttcattccaatcaagcaggagccgcACCTGATTTCACCTGTTTAATCACTTGGTCTTGGCTTTCggtagactcaggtgtggcttctgcttggtt
>XM_034309738.1
TGCAGCAATCAATTGCTTGCCAGCccacataaaattaaaacctaaagaagaagaaggaggagaaggagcaggaggaggCGGAGGAATAGCTGTGTGAGTGGCTCTAGTAATAAACTAATCATGGAGGCAGCAGACTCGTACTTTCATGTTGAGCTCACGGCTGTTGTTGACGGCTTGCTGAAGGCGGCGGTGGTGGAGATCTGCGCTCtggcagacagatggagagatgatTTACGCATGGAGATAACAACGAGCAGATCCGAGAATGAACAGTTAAAGCGCAAACTGCAGATTATGGAGCAGAGCCTTTCTGCATCTCGGGTGGCCCAGTCGAAGAATGTGGGACATCAGGACAAAAAGACACAATTCCCTGAGGTTGGCACCAATCCTACCGACGattgTGGAAATGTGGAGACTGAACTCACAGTTCCCAAAGGAAATCCGTGGGTGCAGCAGTGTAGCTTTCTACCAGGTGTAATAAAAGTGGAAGCAATGGATATATCTGTTACTGCCAAAGCAGGGGAAAGACTATATGtggcacctgtcaaggggtgggatatattagacagcaagtgaacagtcatttc
>XR_003402769.2
TAATGCAGCAATCAATTGCTTGCCAGCccacataaaattaaaacctaaagaagaagaaggaggagaaggagcaggaggaggCGGAGGAATAGCTGTGTGAGTGGCTCTAGTAATAAACTAATCATGGAGGCAGCAGACTCGTACTTTCATGTTGAGCTCACGGCTGTTGTTGACGGCTTGCTGAAGGCGGCGGTGGTGGAGATCTGCGCTCtggcagacagatggagagatgatTTACGCATGGAGATAACAACGAGCAGATCCGAGAATGAACAGTTAAAGCGCAAACTGCAGATTATGGAGCAGAGCCTTTCTGCATCTCGGGTGGCCCAGTCGAAGAATGTGGGACATCAGGACAAAAAGACACAATTCCCTGAGattgTGGAAATGTGGAGACTGAACTCACAGTTCCCAAAGGAAATCCGTGGGTGCAGCAGTGTAGCTTTCTACCAGGTGTAATAAAAGTGGAAGCAATGGATATATCTGTTACTGCCAAAGCAGGGGAAAGACTATATGtggcacctgtcaaggggtgggatatattagacagcaagtgaacagtcatttc

Function

GO:

id name namespace
GO:0060216 definitive hemopoiesis biological_process

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913346.2 True 2671 mRNA 0.41 4 4979656 4986705
XM_034309738.1 False 587 mRNA 0.48 4 4983218 4986707
XR_003402769.2 False 568 misc_RNA 0.47 4 4983218 4986710

Neighbor

gene id symbol gene type direction distance location
LOC113526378 LOC108271168 coding downstream 734 4973188 ~ 4978922 (-)
plekho1b LOC108271071 coding downstream 114262 4848059 ~ 4865394 (-)
LOC113526482 NA coding downstream 143797 4832683 ~ 4835859 (-)
mrap2a mrap2 coding downstream 155796 4812581 ~ 4823860 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC106605505,LOC106579417 coding downstream 471507 4399012 ~ 4508149 (-)
ppp4r1 ppp4r1,LOC107698697,LOC107729936 coding upstream 21016 5007726 ~ 5022275 (-)
LOC113526374 apcdd1 coding upstream 47687 5034397 ~ 5050069 (-)
top1mt LOC108276921,LOC108432759,LOC107698705,LOC107728997 coding upstream 64963 5051673 ~ 5067249 (-)
zbtb14 zbtb14,LOC107698704,LOC106590341 coding upstream 84614 5071324 ~ 5074326 (-)
epb41l3a epb41l3,epb41l3a,LOC108271247,LOC108432756,LOC102298622,LOC107728994 coding upstream 91950 5078660 ~ 5154507 (-)
G2737 pi4kb,LOC107588477,LOC107556110 non-coding downstream 52668 4925272 ~ 4926988 (-)
G2711 NA non-coding downstream 88706 4890262 ~ 4890950 (-)
G2714 NA non-coding downstream 148212 4829901 ~ 4831444 (-)
G2586 NA non-coding downstream 168754 4810702 ~ 4810902 (-)
LOC117597860 NA non-coding downstream 219559 4757349 ~ 4760097 (-)
G3174 NA non-coding upstream 771337 5758047 ~ 5818591 (-)
G3177 NA non-coding upstream 776430 5763140 ~ 5772188 (-)
G3410 NA non-coding upstream 1016250 6002960 ~ 6004149 (-)
G3409 LOC108271438 non-coding upstream 1018159 6004869 ~ 6010590 (-)
G3414 NA non-coding upstream 1027265 6013975 ~ 6016122 (-)
G2709 NA other downstream 74449 4900886 ~ 4905207 (-)
LOC113526660 LOC108280225 other downstream 90058 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 996165 3969392 ~ 3983491 (-)
G2020 NA other downstream 1303820 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 1305692 3669669 ~ 3673964 (-)
G3420 NA other upstream 1082649 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 1112554 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 1197424 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 2919085 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 3313932 8300642 ~ 8302301 (-)

Expression


Co-expression Network