G3420


Basic Information

Item Value
gene id G3420
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6069359 ~ 6085656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU4063
AGAAATTTTTACTGATCATCCAGGCTGCATAACGCTCTTTGAGGTTAAACAGCACAGCAGGTTCATGCAGGAAGGTGAACATCGCCATGTCCTCAATTTTATCGAACTTTGGCGGGTTCTGAGGGTGAACATCACACTCCTTCACAGTGACAGTCTGTGAAATAGAGAAACAATAGCTTAGACCATTGAACAACTGCCAAAATGATTGTTCATTAGTTTCAGTTGGACCAAGAACTCTACCTTTCCAAACTCAGTCTCTACAGTTGCTTTGTCTCCATCTCTGCTGGTGACGGTGGCCTTGACATACTCAACTTCAGGATCCGGCACAAAGCATTCCCGTTTCATGTCAAAAGGACGAGTCTGGGCCTCCAGTCGCTCCTTCTCTGACTTGCGCAGAAAAGGTGCTGCGGGACCAAACTCCTCCATTATTGCGTCGCTCATCCTGAAATCTAGAGACTGTCCTACCTGCTTTCAAGCCTTCAAGTTCCCTCTTTGTTCAGCCAAGTTGATGTTATGCTAACAATGAAAGGAAGAATTTATCAGCTTTGATTAGTTTCTTACTTCTTTCTCACACTACTAAAATGATTATGATTAAATTACGATAACAC
>TU4064
GTCAGCAGAGGCCAATTTTCCACTGACACCAAAGTGGATACGAATGAATTTACCCTGTGTGTAAATAAGACCATGTGAGTTTTACACATTTCCTATATTCTTACaagataaatataaacatacatgAAATATACTTACAAAACGAGACGAGTTGTCATTTCTGATGGTCTTGGCATTACCAAAGGCCTCCAGGGCAGGGTTACACTGGATGATTTGATCCTCCAGGGTACCCTAAAAATTAATCACATGCATTAAATGGCTTATATTTAGGACAATTGTAGGTAAATCATCTTCTTTATAAAATTACTTATAGTAAATTACAAACCTTTTTCTCCAAAGATGGATCTTTCTTTCCAGGTGCTGCTGCAATGCTAGCAAAGTACTGGATGACTCTCTTGGTGTTGACAGTCTTTCCTGCACCAGATTCTCCACTAATGATAAGAATTGATAATCACATATTTATCACAAATATACGCCATATTGTATGTGTCTTTAAAAATCAGGGTAAGTTTTCTACTTACGTGATAAGGATTGACTGGTTCTCTCTGTCTGcaagttaaaaatataattaaaaaaatagatgttAGACATGTTAACAGACACATACCTGTAATCTGAAGGGCATTACAATACATTGTGTTTACCTGCCAGCATGTACTGGTAGGCGTTATCAGAAATGGAGAAGATGTGAGGAGGAGCTTCACTCCTCTTCTTGCCTCTGTAGGCAACAACAACTTCCTGGTTGTACACTGGCAGCCACTTGTAGGGGTTGACAGTTACACAGAAAAGTCCTGAGTAGGTCTAAAAGAGAAGTGTAAGGTTAGAAATGTGACAtctttgttattattgtgtagTACAGGTGTCATATCCTTTTCACTCACGTAGATCATCCAGGCTGCGTAACGCTCTTTGAGGTTAAACAGCACAGCAGGTTCATGCAGGAAGGTGAACATCGCCATGTCCTCAATTTTATCGAACTTTGGCGGGTTCTGAGGGTGAACATCACACTCCTTCACAGTGACAGTCTGTGAAATAGAGAAACAATAGCTTAGACCATTGAACAACTGCCAAAATGATTGTTCATTAGTTTCAGTTGGACCAAGAACTCTACCTTTCCAAACTCAGTCTCTACAGTTGCTTTGTCTCCATCTCTGCTGGTGACGGTGGCCTTGACATACTCAACTTCAGGATCCGGCACAAAGCATTCCCGTTTCATGTCAAAAGGACGAGTCTGGGCCTCCAGTCGCTCCTTCTCTGACTTGCGCAGAAAAGGTGCTGCGGGACCAAACTCCTCCTCTACAGTTGCTTTGTCTCCATCTCTGCTGGTGACGGTGGCCTTGACATACTCAACTTCAGGATCCGGCACAAAGCATTCCCGTTTCATGTCAAAAGGACGAGTCTGGGCCTCCAGTCGCTCCTTCTCTGACTTGCGCAGAAAAGGTGCTGCGGGACCAAACTCCTCCATTATTGCGTCGCTCATCCTGAAATCTAGAGACTGTCCTACCTGCTTTCAAGCCTTCAAGTTCCCTCTTTGTTCAGCCAAGTTGATGTTATGCTAACAATGAAAGGAAGAATTTATCAGCTTTGATTAGTTTCTTACTTCTTTCTCACACTACTAAAATGATTATGATTAAATTACGATAACAC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU4063 False 608 lncRNA 0.43 2 6069359 6071187
TU4064 True 1647 TUCP 0.37 2 6069359 6085656

Neighbor

gene id symbol gene type direction distance location
scn5lab scn12ab,LOC100305061,LOC108436082,LOC105894747 coding downstream 106974 5846570 ~ 5962385 (-)
LOC113526783 c1h9orf152 coding downstream 432926 5632962 ~ 5636433 (-)
nub1 LOC108271334 coding downstream 437699 5622497 ~ 5631660 (-)
lama1 lama1 coding downstream 708635 5316963 ~ 5360724 (-)
LOC113526574 l3mbtl4,LOC108432753,LOC106590345,LOC106579653 coding downstream 810218 5189205 ~ 5259141 (-)
scospondin sspo coding upstream 308129 6393785 ~ 6486610 (-)
vopp1 vopp1,LOC107728740,LOC107655681 coding upstream 896509 6982165 ~ 7028393 (-)
napga napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688 coding upstream 1672728 7758384 ~ 7766765 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding upstream 1685003 7770659 ~ 7803866 (-)
zgc:111976 LOC108260677 coding upstream 1724699 7810355 ~ 7822642 (-)
G3423 slc22a17 non-coding downstream 43861 6023976 ~ 6025498 (-)
G3414 NA non-coding downstream 53237 6013975 ~ 6016122 (-)
G3409 LOC108271438 non-coding downstream 58769 6004869 ~ 6010590 (-)
G3410 NA non-coding downstream 65210 6002960 ~ 6004149 (-)
G3174 NA non-coding downstream 250768 5758047 ~ 5818591 (-)
G3424 NA non-coding upstream 18188 6103844 ~ 6105709 (-)
G3468 NA non-coding upstream 156544 6242200 ~ 6242426 (-)
G3668 NA non-coding upstream 495303 6580959 ~ 6581268 (-)
LOC113526577 NA non-coding upstream 531058 6616714 ~ 6634634 (-)
G3682 NA non-coding upstream 576749 6662405 ~ 6662757 (-)
LOC113526375 NA other downstream 1082649 4979656 ~ 4986710 (-)
G2709 NA other downstream 1164152 4900886 ~ 4905207 (-)
LOC113526660 LOC108280225 other downstream 1179761 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 2085868 3969392 ~ 3983491 (-)
G2020 NA other downstream 2393523 3674246 ~ 3675836 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 13608 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 98478 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 1820139 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 2214986 8300642 ~ 8302301 (-)
G4658 LOC108265278 other upstream 2238926 8324582 ~ 8367964 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G350647 NA non-coding CI01000140 null 1119625 ~ 1246510 (+)