G3410


Basic Information

Item Value
gene id G3410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6002960 ~ 6004149 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU4048
gtcagaggtgctgttatagaaaattaatcaataacttttgactaatcagatttgagaatttaacactGTGGTATAGTTTATACAGCATATAagagattaataaaaatataaaaactttaaaGTTGCACCCGTTTGCAAGATCGTTAGTCCAGCCAGGATGAATTTTAATCCATATCACACTACGTGTCTGCTCACGGCCTTCAATCTTACTGAGGTTATATTCCCCCAAAACCACACGGTATTTCTTGACGTCCAATCGAGGATGCAGTGGGCTGCAGTCATTACGCAATCTGCACTAATAAGGGTGCCTCCGCAAATGTGACCAAAGTCACCTGAGTTCCAGGAATCAAACTGCAGAGATATCTGCAAttccatttatttggTTGAGCATTGGAACCACCTACAACCTTCCCACTTTGTCCGTCATTATCCACTGCCTGCTCAGGTAGAGCAGTGGCAGAGACGAGGCCTGCAAACCACAAATTCATTTAGAGATATTAAGCAGAAGGTTGAAATAATAAAGCAGAACCAAATGAAAATCATTAAAGAATTGCATGTGCATTAACATCACTAGACAGATAAAgcaactacatttttttttctgtatggaaagcatgaaaaaagtaaaaggtGTATATGTGTTACCAATACAAGTCAAGAGAACCGCAAGGTGCATCATGC

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0052689 carboxylic ester hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU4048 True 681 lncRNA 0.46 3 6002960 6004149

Neighbor

gene id symbol gene type direction distance location
scn5lab scn12ab,LOC100305061,LOC108436082,LOC105894747 coding downstream 40575 5846570 ~ 5962385 (-)
LOC113526783 c1h9orf152 coding downstream 366527 5632962 ~ 5636433 (-)
nub1 LOC108271334 coding downstream 371300 5622497 ~ 5631660 (-)
lama1 lama1 coding downstream 642236 5316963 ~ 5360724 (-)
LOC113526574 l3mbtl4,LOC108432753,LOC106590345,LOC106579653 coding downstream 743819 5189205 ~ 5259141 (-)
scospondin sspo coding upstream 389636 6393785 ~ 6486610 (-)
vopp1 vopp1,LOC107728740,LOC107655681 coding upstream 978016 6982165 ~ 7028393 (-)
napga napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688 coding upstream 1754235 7758384 ~ 7766765 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding upstream 1766510 7770659 ~ 7803866 (-)
zgc:111976 LOC108260677 coding upstream 1806206 7810355 ~ 7822642 (-)
G3174 NA non-coding downstream 184369 5758047 ~ 5818591 (-)
G3177 NA non-coding downstream 230772 5763140 ~ 5772188 (-)
G2730 NA non-coding downstream 1006511 4947099 ~ 4996449 (-)
G2737 pi4kb,LOC107588477,LOC107556110 non-coding downstream 1075972 4925272 ~ 4926988 (-)
G2711 NA non-coding downstream 1112010 4890262 ~ 4890950 (-)
G3409 LOC108271438 non-coding upstream 720 6004869 ~ 6010590 (-)
G3414 NA non-coding upstream 9826 6013975 ~ 6016122 (-)
G3423 slc22a17 non-coding upstream 19827 6023976 ~ 6025498 (-)
LOC113526619 smyhc3,LOC103479335,LOC107753080,LOC106965046,LOC107560364,LOC106931403,LOC107384435,LOC105941235,LOC104942663,LOC102781208,LOC105019649,LOC102785441,LOC101486325,LOC108271481,LOC108261465,LOC107081065,LOC106514906,LOC107560365,LOC107753078,LOC101484004 non-coding upstream 24115 6028264 ~ 6094737 (-)
G3424 NA non-coding upstream 99695 6103844 ~ 6105709 (-)
LOC113526375 NA other downstream 1016250 4979656 ~ 4986710 (-)
G2709 NA other downstream 1097753 4900886 ~ 4905207 (-)
LOC113526660 LOC108280225 other downstream 1113362 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 2019469 3969392 ~ 3983491 (-)
G2020 NA other downstream 2327124 3674246 ~ 3675836 (-)
G3420 NA other upstream 65210 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 95115 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 179985 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 1901646 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 2296493 8300642 ~ 8302301 (-)

Expression


Co-expression Network