G2730


Basic Information

Item Value
gene id G2730
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 4947099 ~ 4996449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU3283
gtatatgtatgtatgtatgtatgtatgtggaaaaaaacaaacatgaactcACATTTATGTCCAtctttattttgtacttttccATGTGAACCCACAATCTCTTCAATATTTTTTCATCGTTAATACTTGTGTGGGTAGCCTTAATTGCACCATTTGTTCAACAAAAAATGGGAACAATTGTTTGAGTCTTTGCAAAGTAGAGCAGAGCTAAAAGTCCCAATGAGAGAAAGCCATGACTAAGTAGAGAAACCCTGTGAACTGCATGGTTTCAGCTTATGCTTCAATTGGTTGACATTTCTACATGTAAATGATTCTCAAACAGTATCAGTCAACCTTATAAACATCAATAAGAATGTTATCAGTCAATAAATCACACACCAACTAAAAAGCATGTACATGTCTAAAGCACTGATTGCTGATATACCATGGGTTGGCAAAGCCCACAGGAAATATAAGGACCCATTTGCATACAGTAGTGTACTATGCTTTTAAAGCACACAATATTAATTATGGGCATCCAAATCCATGCCACAAGacacagcattttaaaaaaaaaaaaaaaaaaaaaacccaacaagaaataaattaatccaCAGACTCCCTGTTCCAAGCACCACACAGTATGTACTATCAGTGCTCTTGGAAATCATACTAGGAGATTTAAAATCCTGAAAAAACACACTTGAAAACTGAGTCTGGGGACATTCCGAGAGGTGAATTGACAACGGAGAATCAGAAAAATAGGCACAATCTGGGAGCTATTGAGTCCATTATTACAATTGGCTTTCATACAGTGAGCAATCCTCCAAAACCAAAATGGCAGAATAGAATGGCCCAAAACAAAAACGCAGTGCACTTTAAAAATGTGGCAAACGCACACTCGTATTGGCTGGCAACAAGTAACTGAATTAGTGAGGAAGACCCAGCTAAGCATACACGTGTGCATGAGGACAATCAGTGCCAAGAAAAAATTTACAACAGAGGCATGGCTTTCTAGAAACAAACGAAAAACCTCCACAAACCCTAACGTGATTATGCCTCTTATCCACagattaaaaagcaaaattgTGTCAAAATGACtaatctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaataattacaCTATTACAGTGGCTGGAGTAGCTTTTCATTGTTGtcaaacgtttttttttttttttttttttttttttttttttt
>TU3284
gtatatgtatgtatgtatgtatgtatgtggaaaaaaacaaacatgaactcACATTTATGTCCAtctttattttgtacttttccATGTGAACCCACAATCTCTTCAATATTTTTTCATCGTTAATACTTGTGTGGGTAGCCTTAATTGCACCATTTGTTCAACAAAAAATGGGAACAATTGTTTGAGTCTTTGCAAAGTAGAGCAGAGCTAAAAGTCCCAATGAGAGAAAGCCATGACTAAGTAGAGAAACCCTGTGAACTGCATGGTTTCAGCTTATGCTTCAATTGGTTGACATTTCTACATGTAAATGATTCTCAAACAGTATCAGTCAACCTTATAAACATCAATAAGAATGTTATCAGTCAATAAATCACACACCAACTAAAAAGCATGTACATGTCTAAAGCACTGATTGCTGATATACCATGGGTTGGCAAAGCCCACAGGAAATATAAGGACCCATTTGCATACAGTAGTGTACTATGCTTTTAAAGCACACAATATTAATTATGGGCATCCAAATCCATGCCACAAGacacagcattttaaaaaaaaaaaaaaaaaaaaaacccaacaagaaataaattaatccaCAGACTCCCTGTTCCAAGCACCACACAGTATGTACTATCAGTGCTCTTGGAAATCATACTAGGAGATTTAAAATCCTGAAAAAACACACTTGAAAACTGAGTCTGGGGACATTCCGAGAGGTGAATTGACAACGGAGAATCAGAAAAATAGGCACAATCTGGGAGCTATTGAGTCCATTATTACAATTGGCTTTCATACAGTGAGCAATCCTCCAAAACCAAAATGGCAGAATAGAATGGCCCAAAACAAAAACGCAGTGCACTTTAAAAATGTGGCAAACGCACACTCGTATTGGCTGGCAACAAGTAACTGAATTAGTGAGGAAGACCCAGCTAAGCATACACGTGTGCATGAGGACAATCAGTGCCAAGAAAAAATTTACAACAGAGGCATGGCTTTCTAGAAACAAACGAAAAACCTCCACAAACCCTAACGTGATTATGCCTCTTATCCACagattaaaaagcaaaattgTGTCAAAATGACtaatctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaataattacaCTATTACAGTGGCTGGAGTAGCTTTTCATTGTTGtcaaacgtttttttttttttttttttttttttttttt

Function

NR:

description
uncharacterized protein LOC110494756

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3283 True 1209 lncRNA 0.29 2 4947099 4996449
TU3284 False 1205 lncRNA 0.34 2 4965669 4996449

Neighbor

gene id symbol gene type direction distance location
plekho1b LOC108271071 coding downstream 81705 4848059 ~ 4865394 (-)
LOC113526482 NA coding downstream 111240 4832683 ~ 4835859 (-)
mrap2a mrap2 coding downstream 123239 4812581 ~ 4823860 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC106605505,LOC106579417 coding downstream 438950 4399012 ~ 4508149 (-)
mettl6 mettl6 coding downstream 639038 4302752 ~ 4308061 (-)
ppp4r1 ppp4r1,LOC107698697,LOC107729936 coding upstream 11277 5007726 ~ 5022275 (-)
LOC113526374 apcdd1 coding upstream 37948 5034397 ~ 5050069 (-)
top1mt LOC108276921,LOC108432759,LOC107698705,LOC107728997 coding upstream 55224 5051673 ~ 5067249 (-)
zbtb14 zbtb14,LOC107698704,LOC106590341 coding upstream 74875 5071324 ~ 5074326 (-)
epb41l3a epb41l3,epb41l3a,LOC108271247,LOC108432756,LOC102298622,LOC107728994 coding upstream 82211 5078660 ~ 5154507 (-)
G2737 pi4kb,LOC107588477,LOC107556110 non-coding downstream 20111 4925272 ~ 4926988 (-)
G2711 NA non-coding downstream 56149 4890262 ~ 4890950 (-)
G2714 NA non-coding downstream 115655 4829901 ~ 4831444 (-)
G2586 NA non-coding downstream 136197 4810702 ~ 4810902 (-)
LOC117597860 NA non-coding downstream 187002 4757349 ~ 4760097 (-)
G3174 NA non-coding upstream 761598 5758047 ~ 5818591 (-)
G3177 NA non-coding upstream 766691 5763140 ~ 5772188 (-)
G3410 NA non-coding upstream 1006511 6002960 ~ 6004149 (-)
G3409 LOC108271438 non-coding upstream 1008420 6004869 ~ 6010590 (-)
G3414 NA non-coding upstream 1017526 6013975 ~ 6016122 (-)
G2709 NA other downstream 41892 4900886 ~ 4905207 (-)
LOC113526660 LOC108280225 other downstream 57501 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 963608 3969392 ~ 3983491 (-)
G2020 NA other downstream 1271263 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 1273135 3669669 ~ 3673964 (-)
G3420 NA other upstream 1072910 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 1102815 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 1187685 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 2909346 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 3304193 8300642 ~ 8302301 (-)

Expression


Co-expression Network