RNA id: TU3283


Basic Information

Item Value
RNA id TU3283
length 1209
lncRNA type read_through
GC content 0.29
exon number 2
gene id G2730
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 4947099 ~ 4996449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtatatgtatgtatgtatgtatgtatgtggaaaaaaacaaacatgaactcACATTTATGTCCAtctttattttgtacttttccATGTGAACCCACAATCTCTTCAATATTTTTTCATCGTTAATACTTGTGTGGGTAGCCTTAATTGCACCATTTGTTCAACAAAAAATGGGAACAATTGTTTGAGTCTTTGCAAAGTAGAGCAGAGCTAAAAGTCCCAATGAGAGAAAGCCATGACTAAGTAGAGAAACCCTGTGAACTGCATGGTTTCAGCTTATGCTTCAATTGGTTGACATTTCTACATGTAAATGATTCTCAAACAGTATCAGTCAACCTTATAAACATCAATAAGAATGTTATCAGTCAATAAATCACACACCAACTAAAAAGCATGTACATGTCTAAAGCACTGATTGCTGATATACCATGGGTTGGCAAAGCCCACAGGAAATATAAGGACCCATTTGCATACAGTAGTGTACTATGCTTTTAAAGCACACAATATTAATTATGGGCATCCAAATCCATGCCACAAGacacagcattttaaaaaaaaaaaaaaaaaaaaaacccaacaagaaataaattaatccaCAGACTCCCTGTTCCAAGCACCACACAGTATGTACTATCAGTGCTCTTGGAAATCATACTAGGAGATTTAAAATCCTGAAAAAACACACTTGAAAACTGAGTCTGGGGACATTCCGAGAGGTGAATTGACAACGGAGAATCAGAAAAATAGGCACAATCTGGGAGCTATTGAGTCCATTATTACAATTGGCTTTCATACAGTGAGCAATCCTCCAAAACCAAAATGGCAGAATAGAATGGCCCAAAACAAAAACGCAGTGCACTTTAAAAATGTGGCAAACGCACACTCGTATTGGCTGGCAACAAGTAACTGAATTAGTGAGGAAGACCCAGCTAAGCATACACGTGTGCATGAGGACAATCAGTGCCAAGAAAAAATTTACAACAGAGGCATGGCTTTCTAGAAACAAACGAAAAACCTCCACAAACCCTAACGTGATTATGCCTCTTATCCACagattaaaaagcaaaattgTGTCAAAATGACtaatctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaataattacaCTATTACAGTGGCTGGAGTAGCTTTTCATTGTTGtcaaacgtttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3292 lncRNA downstream 20111 4925272 ~ 4926988 (-) True G2737
TU3262 lncRNA downstream 56149 4890262 ~ 4890950 (-) True G2711
TU3263 lncRNA downstream 58642 4880803 ~ 4888457 (-) False LOC113526660
TU3265 lncRNA downstream 115655 4829901 ~ 4831444 (-) True G2714
TU3110 lncRNA downstream 136197 4810702 ~ 4810902 (-) True G2586
TU3787 lncRNA upstream 761598 5758047 ~ 5818591 (-) False G3174
TU3791 lncRNA upstream 766691 5763140 ~ 5772188 (-) True G3177
TU3788 lncRNA upstream 816448 5812897 ~ 5818591 (-) True G3174
TU4048 lncRNA upstream 1006511 6002960 ~ 6004149 (-) True G3410
TU4047 lncRNA upstream 1008420 6004869 ~ 6010590 (-) True G3409
XM_034314290.1 mRNA downstream 57501 4880819 ~ 4889598 (-) True LOC113526660
XM_026914069.2 mRNA downstream 81705 4848059 ~ 4865394 (-) False plekho1b
XM_026914067.2 mRNA downstream 81705 4848059 ~ 4865394 (-) False plekho1b
XM_026914068.2 mRNA downstream 81705 4848059 ~ 4865394 (-) True plekho1b
XM_026914294.2 mRNA downstream 123239 4812581 ~ 4823860 (-) True mrap2a
XM_034309515.1 mRNA upstream 11277 5007726 ~ 5022275 (-) False ppp4r1
XM_034309484.1 mRNA upstream 11277 5007726 ~ 5022275 (-) False ppp4r1
XM_034309445.1 mRNA upstream 11277 5007726 ~ 5022275 (-) True ppp4r1
XM_034309465.1 mRNA upstream 11277 5007726 ~ 5022274 (-) False ppp4r1
XM_034309666.1 mRNA upstream 37948 5034397 ~ 5050069 (-) False LOC113526374
TU3260 other downstream 41892 4900886 ~ 4905207 (-) True G2709
XR_004579200.1 other downstream 111240 4832683 ~ 4835859 (-) True LOC113526482
trnae-cuc other downstream 877808 4069220 ~ 4069291 (-) True trnae-cuc
trnas-aga other downstream 878109 4068909 ~ 4068990 (-) True trnas-aga
XR_003402808.2 other downstream 963608 3969392 ~ 3983491 (-) False nagpa
TU4064 other upstream 1072910 6069359 ~ 6085656 (-) True G3420
TU4104 other upstream 1274987 6271436 ~ 6390708 (-) False kcnh2b
trnae-cuc_2 other upstream 2561300 7557749 ~ 7557820 (-) True trnae-cuc_2
XR_004578678.1 other upstream 2911883 7908332 ~ 7921917 (-) False fxyd6l
TU5508 other upstream 3328133 8324582 ~ 8367964 (-) True G4658

Expression Profile