G3409 (LOC108271438)


Basic Information

Item Value
gene id G3409
gene name LOC108271438
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6004869 ~ 6010590 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU4047
CTCAAAATCCTGTGTCATTGTGTCAGTTAGCAAGAGGCTTGAGATGAAGTAAGGGGTAGGAAGCTAAACATTTACTAATAATGTAGTAAGTAATGTGTTATATTCATCATGAAATGGAGTGATTTTCTAGCCTGTGCATGCTAAAATAGTTataaaattcagaaatattCATACTCTTATTTGCAGTGGTGGAAAgcatacaaaacacactgacgaATAAAAGTACTGTTCCTGTTGTGATAAGTCACACgagtaaaaagaaaagtattGATCAAGAAAAATACTTGCGTAAATAAATCGTCTGGTGAAAAActacttgagtaattactttacaaattactTCTTCATATGTCTAAAATTGACACAACTAATCTGGAAATATTCTATACTAACTCACCAAATGAGCTATGATGAAGTGAACACCATGCtgattatcaaaaaaaaaaaaagtaaagttagctagctagctagctgaggttaattcatacatgtttccACTTATATAGGTCACTATCTAGCAAAGATGTCCCTTACACATTATCCTCTCTGTCCAGGGGCGTTGtgtcatggctgaccctgcactctgaccccagcttcctaacaagctgggatatgcgaaaaGGGAATTTCACTGTGCCGTAATGTATATgcgacaaataaaggcttcttcttcttaaaatttaaaaaaaaaaaaaaaaaaaaaacattacagtcaACCATGTACTCCAGTACTATAACAAGAGCAGATGTGTTTATATTCCCCTGATTATATATGTGTGGTTTACTACGATATAGGTAAAAGAAAATCTGCTATTAAATGTAAAACGTAATATAAAGCAAGTAATAGTTTAAAAGtgacctttatttattttacttttgaacaaagcaaaaatgtaaaatctagaaaaaatatctgaagttgcaaagaaaaaaaaaagttctccaTTATTTTCTATTTGTCCTTCTTTGTTTAAGGTTTTCTGTCATGTATATCAGGACAATTCTTTTTAtcactaacataacatacatgTCCAGGAAATTACCTTAaaacatacattatttatatgaaatataagtTCAGTGCAAACAATTGCATAGACTTACTTATTTAAAGCAACTTAATGAGAGCTTTACAGCTGTTTCATCATATCATAAGGAACAAAAATTGTCAAGAAAGCTCATGTTaagataataaaacaaatcaaatcaaatagaAGTGAAAGTTAATGTGATATAAAagtggatttatttaaattgccTCTAAGGACTTTTTCTGGTCTTCTGATATTTGTTTTGAGTTTTGTGCTGTTTCAGATATTTTTCCTCAGCTCTTATTATACACTTTAATGataaattacttttattatcattatacacATACAATGAGATTCAGTGTGCACCGAAGTTTCCTGCCGAAGCTACGATACATATATATGGTTATGAGGAACATTCAAATAATTTGTCAAAAGGGATGTGAAATTCTGTGCTTATTAATAAAGATAGAGTTAGAAACACATTGCTTGCATAGCTGATGAAGGACCTTTGTatgaaacatcctgtttctcttgAAACTTTGTTTAATTCACTTCTACCACAATAATACTACAATAATTACTGAAGTATGCTGCAGTTACTCCCTGGATTCttggaaaaatacaaaaaatacatttgcacCATTATAGGTGAAAAAACCCTATATGGCAACAGCATTGATCTCGTGACAAAATCCCCCTAAATGCCCttgtttataatgttttctgGACGTTACTTAGTTTTATAAATTAGAGACTACTGAAATTTCCAAAAGTGTGCCAATTTCCTGCTTCTCTTTTACTGGGTAATTTGAATACATAAAGGAAGCTCTTTAATAATGTTATACTATCTGTAATTTAGCTATCCGGACTACTTTTCAGAATaatttttggttcattttgaTCTGAATGTTTTTCTAGACTATCTTACTGATCTATAAACTGAACGAGTTTATAATATAACAGTATAATCTTACAGTCTTTACATATCTTCATTTATGTAATTATGCAGTCAGGTCCACTAACCTGATAACTAAGGTAAGCGAGTTTCTAAGGTCACTCAACAGTTCTCTTCAACTCCTACATCATTGACTTTGTTCTGTAGGTGGCGCTGAGAGAGATAGCGACTGAGTGTGTCCACCTCATGGCTAAGCTGTTCGATGTGCAGTAGTAGCCTGTGATTTTCCTCCTGAAGCTCCAGGGCCTTTTGCTGGGTGAGCTGGATACGCCGGCGTGCTTTATCACGGCTCTTCCTCACAGCAATGTTGTTGCGCTCGCGCCTCATCCGGTATTCCATGCTGTCCTTACTCAGGCCTCTCTTCTGGCCTGACTGCCGAAATGTGgacggaggaggaggaagaaggaaCTGAGAAAACTCCTTCACCATGTTGCCAAGTTCACAGACGAGGCAGAATGAACACAAAAGCAATATGATCACTTGACTTGCAGTAAATACTATTATGCAAAATTGTATCAAAGTAGtaggaacaaaaataaatctttcataACAACACTTCTTGTACCTGTTGTATAACGTGACTGTGCTGTGCTGGTCTTTCCATTGTTGTGTTTGAACAAGTAGAATAGGGCAAATACGCCATGCCCATCATCGGCTCTCCGCTCCTCTCGCTTGTCCTGGACAGTCCCTGAGACCCCATCGAATAGCCATATGGTCCTCCTTCCATCTGGGGAATGTGACTGGGCAGGTTACTGGAAGATGAAGTGGTGGAGTCGGGAGCCAAGGCCAAGGTATTGTTGACCAGTGAGGAGCAAGAATGATTATTGGATGAGAAGATATGAGCGGTAGAACGACTGTGTGAGATTGACATCTAAATGGACAAGAGATGATAAATAAGCAAAAGTGTTTCTATGGTCGCTAGTAGCtagaagaataaaaatatttaaaaagttgaATTTAGTCATGTAAAGATGGCAGTACTTCCAGGTACGTAAATACAAAAAATTCAAATGATATAAGTTATCTTTCATAGTCTCTGCTGGAGAGAAAAGACAGTAAAATAGATATCTGAAAAGAACTCACCTTTAATATGCCTTCTTCGGTGTGCGTATAGCTCCACTCTTGCACCCAAACTACGCTGGTCTGTCCACAAAATCCGTTATGATACAGGTACTCAAGAGATCATGACACCATCATTTCCTCTGTCACAACccccttctctgtctctctctctctctcctttgccTCACAAATTggcttttttaatttcactgacTTTCTAGCggataaatgtaaattatttaacttgaattttcaacaaaacaatatttcaataataatatatctaatattCAGGAATAGAAACAGGAAGCaggtaaaatatgtaaatgtcttatttatatgtaaatgtcttaattatatttattcttatgtTTAAGCTAAATATATCTGTGCTCTgatatactttttttattattgttaaatgttGTAGTTTCTCAATCAGTATGACCCATAAAACTGATAAAACGTTGGAGGCTGGGTGCCCAAACTGCAGCCATACTaatcagagaaataaaaaagtttattagttcatatatataaaaacaaatgatcCATGATTTATAATTTTCTCTGGTCCATAGAGCTATCTGTATAAGGATATAATTGGCAAACCTGTTCCTAGACTTGTAACACAACTTTGAGAAAAAAGGTCAgagaaatgaatttaaatgatgAAAGTTAGAGCACGAAGCAAGAATCCTTGACCAGAACCGGTCAGTGATGGATGGACAGTCAAACAGTAGAGCtacaaaactgaactgaataacTGTTCACTATTCTAATCTCGGACCTCACAAACCTGGGCATGGATATTATCTTCTTAAATCAATACACTTCATTAGTTTAGGGATTTTAGCACAGGAGAAGCTCTGACTTTACCTCTGAATGGATAATTGGGTCACTgataaaagccaaaaaaaagccaaactgACTTTTGTCTGCTCTTAAAATGTATGATAGTGCTTCTGTTCTTCACAGGGATGAGTCAATGCCTCACTTGTTCCTCATTTGTTCGATATTTGTTCAACAAGGTCTTAAGCCTTTAAGATTAAAGtctgttttttatatttatattaccaTTTATTGTATGGTGgttgtgttattattttaaacaacaagcagacaaatgtaaaaaaaaaaaaaaaacatcacacaaCCGTTAACATTTCTACAGATTGCTTGGTCTTTTATTCAACAGCCACAAAACATGTTGTTTACGCGCTTTCCTGTGAAAGAAATAAGAAGACATGTAAGTAAAGGGAAGTACACATCAGTGCTCCACAGTAAAAGAAATCACTATTGTTAACTGTGTATAATTTTGGCATCAACAAGATTTTAAAGCCCCAATCAGAACATGCCATAACAGTACAGTGAGAATAGTAATAAAATCTGTCTTTACACAAATTGTAAGGTTTATTGTGTTTGGACTAAgtacttttgttgttgttgttgttgttgttgttgttgttgctgttgttgtttgtcAGTCTGACCAGCAGTTTTCATTCAGGACTTTAATCTGAGTATATCTAATTGTAGCATAAAGTTTGAGCATGATGCCAGCCATGCAATTTCTAATCTTTTTGAATTACTTTTTGAAAGTTCCTTAAAAACAAGACCTTTAAGGTTTCACACTTCtatcagcaacaaaaaaaagagaaaacctACATTATACAGCCATTCACTGAAGGCAGACACGCGAGTGAAGACTGTTGGTTTGGTGTACAGGTTGCAGTTTACAGAAGAGCCAAAGCTGACTACACCATGAACCGTCCAATGGCCATCAACGAAGCAGCTCAGAGGTCCACCAGAGTCACcTGGCACCCAGAGGTCAAACCGTCTCCTCCAGCGCACACCATGGTTTTCTTGACCACAGTGCTCCACCATGTAGGACTGGAGCACACAGAGAAATCCACAATACCAATGGGCGCCTCCTGCAGGATGTCTGGCATATAACTACCAGCTGAGAACAGAGTAATGTGAAACAAGAGCTAGTCAGATATTACAAATCAACATTCTTTAATTTACAGAATATTATTTCTACTCATACTTAGATGTAGATTACAAAATTGGACACATTGAAGATGGTTTGGTCCAACAAACTCCTGTTTGATTTAAATTACCTGAGGGTACCATAATCCATGTAGAAGCAGTAGAAATATCAGTGTCATGTTAAATTCAagttaaaattgtaataataaaagtacaaataaaagatgttaatatatttcacaaacaaaAGAGACATACTTTAAGTAACAACATTTgcaaacttttttatttattacaaaagttTCAATTAGTGTTAGCTAAAACCAAGTTAATCGGTCTAAAGTGCAGTCATGTGGAGCAGAAGCATCAGGAACATGGATTTCAGCTTAGAAAACAAAATCTGATTAAGCAAAATTGTTGCATGTTATTGTGAAAAACCTTTTCATACTCACTAGCCAGAAGGCCCCATCCTGTAATATAGCAAGGAAAGCCATTGGGCAAAACTTGACCAGGATAAGGCAGATCTGCAATGGCTACATAACCATTGTCATAGGCCGGAGAGTCCAACTTCATCAAGGCAAGATCAT

Function

NR:

description
PREDICTED: CCAAT/enhancer-binding protein epsilon-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4047 True 5630 lncRNA 0.47 2 6004869 6010590

Neighbor

gene id symbol gene type direction distance location
scn5lab scn12ab,LOC100305061,LOC108436082,LOC105894747 coding downstream 42484 5846570 ~ 5962385 (-)
LOC113526783 c1h9orf152 coding downstream 368436 5632962 ~ 5636433 (-)
nub1 LOC108271334 coding downstream 373209 5622497 ~ 5631660 (-)
lama1 lama1 coding downstream 644145 5316963 ~ 5360724 (-)
LOC113526574 l3mbtl4,LOC108432753,LOC106590345,LOC106579653 coding downstream 745728 5189205 ~ 5259141 (-)
scospondin sspo coding upstream 383195 6393785 ~ 6486610 (-)
vopp1 vopp1,LOC107728740,LOC107655681 coding upstream 971575 6982165 ~ 7028393 (-)
napga napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688 coding upstream 1747794 7758384 ~ 7766765 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding upstream 1760069 7770659 ~ 7803866 (-)
zgc:111976 LOC108260677 coding upstream 1799765 7810355 ~ 7822642 (-)
G3410 NA non-coding downstream 720 6002960 ~ 6004149 (-)
G3174 NA non-coding downstream 186278 5758047 ~ 5818591 (-)
G3177 NA non-coding downstream 232681 5763140 ~ 5772188 (-)
G2730 NA non-coding downstream 1008420 4947099 ~ 4996449 (-)
G2737 pi4kb,LOC107588477,LOC107556110 non-coding downstream 1077881 4925272 ~ 4926988 (-)
G3414 NA non-coding upstream 3385 6013975 ~ 6016122 (-)
G3423 slc22a17 non-coding upstream 13386 6023976 ~ 6025498 (-)
LOC113526619 smyhc3,LOC103479335,LOC107753080,LOC106965046,LOC107560364,LOC106931403,LOC107384435,LOC105941235,LOC104942663,LOC102781208,LOC105019649,LOC102785441,LOC101486325,LOC108271481,LOC108261465,LOC107081065,LOC106514906,LOC107560365,LOC107753078,LOC101484004 non-coding upstream 17674 6028264 ~ 6094737 (-)
G3424 NA non-coding upstream 93254 6103844 ~ 6105709 (-)
G3468 NA non-coding upstream 231610 6242200 ~ 6242426 (-)
LOC113526375 NA other downstream 1018159 4979656 ~ 4986710 (-)
G2709 NA other downstream 1099662 4900886 ~ 4905207 (-)
LOC113526660 LOC108280225 other downstream 1115271 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 2021378 3969392 ~ 3983491 (-)
G2020 NA other downstream 2329033 3674246 ~ 3675836 (-)
G3420 NA other upstream 58769 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 88674 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 173544 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 1895205 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 2290052 8300642 ~ 8302301 (-)

Expression


Co-expression Network