G2709


Basic Information

Item Value
gene id G2709
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 4900886 ~ 4905207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU3260
TGAAGACATCCATGTTTACTTGGGTGgatgaaacaaaacatttatgtaCAAGAGATCCACATCCAAAGGCATAAATGAAAAATAGTTAGAATCTGGGAGAAAGtacaaatagtttaaaaaaaggtcaTCACCTCTCATCATCTTTAGTCTTATGCAATAAAATTAGGTTTGAGGTTTTTAAGACACAATTTCACCTCAGGATAATGAATTTAGTCATAATTAGACATTAAATATGTACTGCCCATATTCCCCCTTTCTTTCAAATTTCTGTAACAAATTAACAGTTGGATCCAGCATCTGTTCGTTTTGTCTCAAGGTCCTGACAGTGTTCTAAAAGCTCCTCTTTCTCAATAACATGGAGTACGGCTTGTGATTGTGAGGAGTCATCTAGAAGAAGGGGAGAACACCTCTCTGAAGTCTCACTTGGCACCTCTAATCCTTCTTTCACCATTGCCTGTGCTTGTCGTTCTTGTCTTGTCTCAATTCTCTTGCTCTCTGCTCTGCTGTTATCTTCTGTTTCTTCAAGTaattctctctctgcctgttcaacactgcttttattttcactgattacattttcttttttatccagGATGCTTTCGGCATGTTTCTCCATGGACTCATCCTTTGACTCAGAATCTATTGCCTCAGGTCCAAGCATGGCTTCTGTCAACATATTCAAAAGTTTCAACTGAGCATTAGCCTCCTTTTGACATTCTTCATGTTCTGTGATCAGTCTGGAGAAGCAGAATGAGTGCTGAATTATTTGAGGCCTGCCAGAACAACAAGCCAAGGCCTCCTCTAACCAGGACATAAGAAGTTGAACCAGGTCTTCAGGCTTCACCTCAGCTATCCTGTTTTGGGTTGCCAAATGAGACCAGCGACACAGCAAGAACTTTTTCAgcacagggcacacacacatttccaaagGCTGTCGTTGGCTGCTGCACCCAGATGGAATAACCATAGGTAAGGTCTGGGTTCTACTTAAGGTGGATAGGAAGTCTTCTGTCATGTGGCTATGATGGCCATCAATAACTAGCATGGCCTTATTCCCATTCTGAGAGTTTAAATACTGCTGCCATACATTAGCAGTCCAGATCTCTAgttcttctttttctgaaaaacctTCAACTCTCGCTTCAAGTTGAACTAAGTCTGACAGCCCTTTGCTAAAACCATCTAAAGAGGTGCCTTTAATAAACACCATTGTAGGCAACATTGTACCATCTGCCAGCACTGACAGGTAAATGTTCATCCATGGTTTCCCGGTGCCCTCTAATTGGAATGCTGAGTCTTTAGAAGTCCCTGTACTATCGACAAGTCGGTCAAAGTCAACAAAAATTGAAAGCTCATCCATAGCACCAACAAGAGAAAGTGGAACAttgtgtgttttaatctgtCTATGTACAAACCCTGTGAAATCTTGGCAATGTTCCTCCATTCTGCGTGGTAGCTGATGACCAGGCATGCCAATATTGTGCAAGCCCAGCTTGTGCTGCAGCATAAAGGTCACTGCCCACTCATATGAAATACGGAAGGAACTGCTTTGATTAGTGTGACTGTGAACCTCAGAAGCTTTTTGAAACAGGTTCTCCTCTCTGATAGGATGCTGCTGCTCCCGCTGGACTAGTACCCACTCCACCAAACGCTCCACAGCCTCTCCGCTGCTACTGCCTAGACCCTCACAGTCTAgtcttttctctttgtcttgAAGCCAAGTCCTAATGAGCTGAGGTTCTGTGTCCATATCTTTGGCTGCTTTCTGGATTCCAGAGCACAGTGCAAACAGTAGAATTCGGAGCTGACGCACAGACAGCATATCCTCAGTTTCTTTGATAGGCTTTGGAGAATTAGGCTTTGCTGCAGACTCCTTGCCTTTGTGTTCATCTCCGATCTCAAGGGGCTCTTGCTGACTACTGTCATCTGTCTCCAATTCTGAATCTGATGACCCCAGAGGGGCCAATTCCTGATCAATGTCTTCAGTCATCCCAGAGGAATCCTCCATTGCTGAGCCACGGGGAAAGTTTTTAGGAGTAGTGGTGTCCTTGACCGGCCGAGTATGTTGCCTGAAAGAAGATACAAGTGTTACTGTATTTTCTGGACTAACGTCTACAGAGCACTGGACTAAAGTCACTGGTATATTTAGAATGGTTCACCATCACCATCTGGTCAGCAGTGCACAGGGACTGGCAAATTGTGTATACCAACAGTTGTGTTACAATCTGTAACTCTAAACCTACAAAGTGCATCTATATGATAGGTGTACCGAATAAACAAGCAATGGAAGTCTATTTAACACCTTGTCTATTTAATTACTCccacacaaatttaaaaaaaaaaaacatacctcTTAGGCTCCACAAACCCAATTTTAGGATTACCtgtggagaaaataaaaataagtaagaTATCTCATACCAGTGAACCATTTAGAAAATGTTAGTACTCTTAACCTTTATAACTTATACATTCATGCTCAGGCTTTTATGCCTTATAACCTTTGAAATCTGCAGAGAAACCATGGTAGTCTCAGAAGCATCAGGTACACTTGACCTGGCATGCAGTGGAGCCATACAAAATCTCATGATGCTGATGCTTTAGGTCACAATTCTTACATCATCCTGGCCTAAAACAATTTTTAGCTAAACAATGTCTGACCCCCTCAGAAGTCTTAGAAGCTTCTGTCCTACCCTCACGTCTCCGCTGATGCAACTGGTCACTGTTCATTTCCTTCTGAAGAGCTTGTCTTTCAGCACACTTGGCCAGCTGGTATCCCAACCGTTTTCGGTAGTTAGCCTGAGAGAAGTGGCCTCCTTGAAGCCATCCGGGTGGGTTGCCTTTCCGAGTCTCTCGTAGTACAATAAAGGAGTTAATGATGCTCAAGTTGACAAGGAACCAGAAGAGACGTCGCCAGTTTGTGTCCAGGACCAATCCTCCTAGCTGGTTGCAGGCCAGGAGCTGACTGCAGATGTCCACACCACGCATGTTATCTTGCAGCAGCTTGAAAGCCAGTGGTCTTGAAATGGTGGAGAGTTCCCCTGCCTTACTGGTCGACCTCCTCCACACTTTGTCTGGCTGGCCTGCCACAGCATTTGTAGAAATGCAGACCATTTCTTTTGCATCCTTCCATCTGGTTACCAGCACAGGGGGGTGCTCAAATTGAACATAGTCCCCAGTGTTCTTCAATGCAGGCTGATCCCAGAAGTCTCTAGGGAGGACTGTACCACAtatggagctggagctggagcagTATATGTTCTTTTTGTGTAACTCCTTCATTAAGGGAATACTTGTTAGCAGGCTTGACATGAATATCTGATGATGTCTGCCTTCAAGGCCCTTTACAAGATATGGCACAACCAAACTCCCCAAGtctctgttctttttctgttttgtcagGATTAACAATTTATGACAGTACCCTGACTTTGAATCACATAAGAGCCATATTTGTGGTTGAGAGCTTCTACACTTCTCCCCATCAGCCGCATTCTCATGGGACCTCAGTAAAGTTCGATCAATAGTCAAACATTTGTTTGGCTTGTAAGCTTTGCGCATGCTAGTCTCCAGGATTTTCAACATGGGCTGGAAGAAAGACAGCTTGTCCACATTCTGGTGGTCTTCCTTTGCAAGCATGCTGTTCATCCGAATATGCAGGCTGATCTGCTTGAAGCGTGCTGCAGACATGGTCCTGTAGAATGTGGAACAGCTATGATAATGCTCCCAGGACCAATACATCTCTGGCTCTGGAAGAACTTGCAGTCCCATCAGAATGGACAGGCCTATGAAGCCTCTGACCTCTTCACTGGTAAGAGATTGCCAAGTGGGGTCCCCTCTGCCTACATAGCGCTGATAATCAGCATAAGCATTGGTCTCCTTAGCAATCTGCTCTATGAGGCTGTCGGGGAATAGTAGCTGGAAGTACTCAAGGACATCACTGCTTTTAGCCATTGAATGCTGTGGACCACTGCAGTCTGTGAACTCTGGCACAGATCCTCCACCACTTGGAATGCTCCAGTTCTCCATGGACAACCAGTCAGGCTTTGCCTCAACATCATTAGCTCCttccacttcctcctcctcctcctccacctggCAGAACTCAATATCAGTCTCCAGACACTCTGTAGGGGAGGGGAGGGATCATAGGAACACACAGTTAGTCTTCTTTTTGGAGCCTTATGACCACTATTACTCCACTTTACAACAGTATGTTTAATGCTAAAGTGGTTCCCATGTGCCAGTTAGCTTTTCTGAAAGAGTAAGGAGCTCAAAAGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3260 True 4284 TUCP 0.54 2 4900886 4905207

Neighbor

gene id symbol gene type direction distance location
plekho1b LOC108271071 coding downstream 35492 4848059 ~ 4865394 (-)
LOC113526482 NA coding downstream 65027 4832683 ~ 4835859 (-)
mrap2a mrap2 coding downstream 77026 4812581 ~ 4823860 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC106605505,LOC106579417 coding downstream 392737 4399012 ~ 4508149 (-)
mettl6 mettl6 coding downstream 592825 4302752 ~ 4308061 (-)
LOC113526378 LOC108271168 coding upstream 67981 4973188 ~ 4978922 (-)
ppp4r1 ppp4r1,LOC107698697,LOC107729936 coding upstream 102519 5007726 ~ 5022275 (-)
LOC113526374 apcdd1 coding upstream 129190 5034397 ~ 5050069 (-)
top1mt LOC108276921,LOC108432759,LOC107698705,LOC107728997 coding upstream 146466 5051673 ~ 5067249 (-)
zbtb14 zbtb14,LOC107698704,LOC106590341 coding upstream 166117 5071324 ~ 5074326 (-)
G2711 NA non-coding downstream 9936 4890262 ~ 4890950 (-)
G2714 NA non-coding downstream 69442 4829901 ~ 4831444 (-)
G2586 NA non-coding downstream 89984 4810702 ~ 4810902 (-)
G2551 NA non-coding downstream 113644 4722487 ~ 4787242 (-)
G2737 pi4kb,LOC107588477,LOC107556110 non-coding upstream 20065 4925272 ~ 4926988 (-)
G2730 NA non-coding upstream 41892 4947099 ~ 4996449 (-)
G3174 NA non-coding upstream 852840 5758047 ~ 5818591 (-)
G3177 NA non-coding upstream 857933 5763140 ~ 5772188 (-)
G3410 NA non-coding upstream 1097753 6002960 ~ 6004149 (-)
LOC113526660 LOC108280225 other downstream 11288 4880803 ~ 4889598 (-)
nagpa nagpa other downstream 917395 3969392 ~ 3983491 (-)
G2020 NA other downstream 1225050 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 1226922 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 1241567 3658180 ~ 3659319 (-)
LOC113526375 NA other upstream 74449 4979656 ~ 4986710 (-)
G3420 NA other upstream 1164152 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 1194057 6099264 ~ 6177027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other upstream 1278927 6184134 ~ 6391389 (-)
fxyd6l LOC108272023 other upstream 3000588 7905795 ~ 7921928 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G96038 NA non-coding NC_035907.1 CM008310.1 395816 ~ 397377 (-)