napga (napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688)


Basic Information

Item Value
gene id napga
gene name napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 7758384 ~ 7766765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913995.2
TGCGACCCGGAAGTGAACAAAATTGTCATCTCACGTCAGGAGGAAAGATCACAACAAACCGGTTGTTCTATGTTACTGCGTAGATCTTAGTTTAATATAAACACTACATGGTGAAAGGAGCTGCATCAGAAGCATGGCTCAGAAAATAAACGAGGCCCATGAGCACATCGCGAAAGCGGAAAAATATTTAAAGACCAGTTTTATGAAGTGGAAGCCGGATTATGACAGCGCTGCGTCAGAGTACGCTAAAGCAGCTGTCGCTTTCAAAAACGCCAAACAACTTGAAGAAGCAAAAGATGCTTACTTACAAGAGGCAGAGGCTCACACCAACAACAGAACTCTTTTCCATGCTGCAAAGGCCCTCGAGCAGGCCGGGATGATGCTGAAGGACATGCAGAGGCTGCCTGAGGCAATTCAGTACATAGAGAAAGCCAGTATGATGTACATAGAGAATGGCACACCAGACACTGCTGCCATGGCTCTCGACAGAGCTGGAAAGTTGATAGAACCTGTGGATTTAGCCAAAGCTGTGGACCTCTATCAGAAAGCTGCATCAGTGTTTGAGAATGAGGAACGTCTGCGGCAGGCTGTGGAGCTGCTCGGCAAAGCGTCCCGACTCCTCGTCAGACAAAAGAAATTTGATGAAGCAGCATTGTCGATCCAAAAGGAGAAGAACATGTACAGAGACATAGAAAATTACCCGACATGTTTTAAGAAAACCATTGCACAAGTGCTGGTTCACCTACACAGAGGAGATTACGTAGCAGCGGATAAGTGTGTGAGGGAAAGCTACAGTATCCCAGGATTCAGTGGGAGTGAGGACTGTGTTGCGTTGGAGCAGCTGTTACAGGGATATGATCAGCAGGATGAAGAGCAGGTGGCCCGCGTCTGCAACTCCCCACTGTTCAAATACATGGACAATGACTATGCTAAACTGGCCATCACTCTCAATGTGCCTGGAggagggaagaagaagaaggcagCTGCTGCTCCTGGAGACGGAGGAGTGAACAGTGGAGCTGATAAgcctgaggaagaggaggacgaGTATGCAGGAGGACtctgttagttagttagtttgtcCATAACATTGCTGATCCCAGTATCCATTTTCAGTCAGATGGAGAGATTTTCCAGGACTGTACATCCTGCTGTTGAAAATAAACCCCATctttttctttgtgtattttatgtttagCTTTAATGCTTGATCAGGAATTGGTGAATTGAGCCACAGCCAAAATAAGTTCTaggttaaaggaaaaatccaccctgatattaatttttatacttAATATGCTCTCTTCaatggcatccaagatttattttataaagaagTTGACGCCAGCAAGCCAGCGTTTGCCATCTCCAATACTTTTACGTTGGgttttcattaatatgacattgaatgcTGCAGGAAAATGGTCCATACCCTGATAGTTATCCTTTATGTTTAAGATCTTTGacttttttctcctattaaatgccattgtaactgtgctagcaacaTCCCTCTCTGACGTTAGTGCAGCAGACAACACCTAACCTCTCACAGTAGTAATGtaaatacagcatcaaccagCAAATTAACACAATAGTTGCTAAgtacaaatatttcaatgtaagtgtatttattgtgtttcagggtggagttttcctttaatccACTCTGAGTGTTACTAGCGTAGGGGGTGTGGCTTTGCACGTTGTTGCTCATTG

Function

symbol description
napg Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in intracellular protein transport. Located in mitochondrion.

NR:

description
PREDICTED: gamma-soluble NSF attachment protein-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K21198 NAPG, SNAPG; gamma-soluble NSF attachment protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913995.2 True 1719 mRNA 0.44 11 7758384 7766765

Neighbor

gene id symbol gene type direction distance location
vopp1 vopp1,LOC107728740,LOC107655681 coding downstream 729991 6982165 ~ 7028393 (-)
scospondin sspo coding downstream 1271774 6393785 ~ 6486610 (-)
scn5lab scn12ab,LOC100305061,LOC108436082,LOC105894747 coding downstream 1795999 5846570 ~ 5962385 (-)
LOC113526783 c1h9orf152 coding downstream 2121951 5632962 ~ 5636433 (-)
nub1 LOC108271334 coding downstream 2126724 5622497 ~ 5631660 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding upstream 3894 7770659 ~ 7803866 (-)
zgc:111976 LOC108260677 coding upstream 43590 7810355 ~ 7822642 (-)
itgb1a itgb1,itgb1a,LOC107653806,LOC107565694,LOC107566918 coding upstream 88204 7854969 ~ 7897912 (-)
LOC113526829 LOC108271509 coding upstream 177280 7944045 ~ 7952913 (-)
kcnn4 kcnn4 coding upstream 233309 8000074 ~ 8046352 (-)
G4100 NA non-coding downstream 150192 7607455 ~ 7608192 (-)
trnae-cuc_2 NA non-coding downstream 200564 7557749 ~ 7557820 (-)
LOC117598440 LOC107734324,LOC107655679 non-coding downstream 230147 7516789 ~ 7528237 (-)
G3979 LOC107747660 non-coding downstream 364998 7393122 ~ 7393386 (-)
G3926 NA non-coding downstream 469948 7288195 ~ 7288436 (-)
G4200 NA non-coding upstream 1874 7768639 ~ 7768848 (-)
G4270 NA non-coding upstream 55962 7822727 ~ 7823011 (-)
G4273 NA non-coding upstream 60083 7826848 ~ 7827128 (-)
G4274 NA non-coding upstream 61751 7828516 ~ 7828845 (-)
G4251 NA non-coding upstream 65311 7832076 ~ 7836027 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other downstream 1366995 6184134 ~ 6391389 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other downstream 1581357 6099264 ~ 6177027 (-)
G3420 NA other downstream 1672728 6069359 ~ 6085656 (-)
LOC113526375 NA other downstream 2771674 4979656 ~ 4986710 (-)
G2709 NA other downstream 2853177 4900886 ~ 4905207 (-)
fxyd6l LOC108272023 other upstream 139030 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 533877 8300642 ~ 8302301 (-)
G4658 LOC108265278 other upstream 557817 8324582 ~ 8367964 (-)
si:ch211-285f17.1 kiaa1217 other upstream 1209982 8976747 ~ 9093317 (-)
G4948 NA other upstream 1251642 9018407 ~ 9112988 (-)

Expression


Co-expression Network