G4273


Basic Information

Item Value
gene id G4273
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 7826848 ~ 7827128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU5033
TCGTACATGAACTGCAAGGTGAGAGCTGACTTGCCCACACCTCCACTGCCGACCATAATCACTTTATGCAGGGCCAGAGAGTTCTGCCCTTTTGGCTTGGCGGCTGCCATGGCAACTCAGGAGGTCAGGGATAGAGAGGAGGATTATGGGAGATGTAGGAGAGTGCTGAGAAGCAGTGAGGAGAGATCGGGAAGAGGGAAATGGTCTAAGTCACAGACGTGATGAGGAGCAACGTGGACTCTGGAGTCTGGAGAAGATAATGTTCAGGACCAAGGCTGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5033 True 281 lncRNA 0.53 1 7826848 7827128

Neighbor

gene id symbol gene type direction distance location
zgc:111976 LOC108260677 coding downstream 4206 7810355 ~ 7822642 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding downstream 22982 7770659 ~ 7803866 (-)
napga napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688 coding downstream 60083 7758384 ~ 7766765 (-)
vopp1 vopp1,LOC107728740,LOC107655681 coding downstream 798455 6982165 ~ 7028393 (-)
scospondin sspo coding downstream 1340238 6393785 ~ 6486610 (-)
itgb1a itgb1,itgb1a,LOC107653806,LOC107565694,LOC107566918 coding upstream 27841 7854969 ~ 7897912 (-)
LOC113526829 LOC108271509 coding upstream 116917 7944045 ~ 7952913 (-)
kcnn4 kcnn4 coding upstream 172946 8000074 ~ 8046352 (-)
si:dkey-79d12.5 LOC108271012 coding upstream 223524 8050652 ~ 8057845 (-)
has1 LOC108265336 coding upstream 328872 8156000 ~ 8158778 (-)
G4270 NA non-coding downstream 3837 7822727 ~ 7823011 (-)
G4200 NA non-coding downstream 58000 7768639 ~ 7768848 (-)
G4100 NA non-coding downstream 218656 7607455 ~ 7608192 (-)
trnae-cuc_2 NA non-coding downstream 269028 7557749 ~ 7557820 (-)
LOC117598440 LOC107734324,LOC107655679 non-coding downstream 298611 7516789 ~ 7528237 (-)
G4274 NA non-coding upstream 1388 7828516 ~ 7828845 (-)
G4251 NA non-coding upstream 4948 7832076 ~ 7836027 (-)
G4517 NA non-coding upstream 76184 7903312 ~ 7903540 (-)
G4524 NA non-coding upstream 146657 7973785 ~ 7976769 (-)
G4543 NA non-coding upstream 172013 7999141 ~ 7999370 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other downstream 1435459 6184134 ~ 6391389 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other downstream 1649821 6099264 ~ 6177027 (-)
G3420 NA other downstream 1741192 6069359 ~ 6085656 (-)
LOC113526375 NA other downstream 2840138 4979656 ~ 4986710 (-)
G2709 NA other downstream 2921641 4900886 ~ 4905207 (-)
fxyd6l LOC108272023 other upstream 78667 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 473514 8300642 ~ 8302301 (-)
G4658 LOC108265278 other upstream 497454 8324582 ~ 8367964 (-)
si:ch211-285f17.1 kiaa1217 other upstream 1149619 8976747 ~ 9093317 (-)
G4948 NA other upstream 1191279 9018407 ~ 9112988 (-)

Expression


Co-expression Network