dek (dek)


Basic Information

Item Value
gene id dek
gene name dek
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3770909 ~ 3780114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914408.2
CTTCGTGTTTGTCCCCGGTCCCAGGGTGAGCAGGTCACGTGATCACACGCCCACACTTTTCAAACGCCATGTTGCAGCtcttttcagttcagtttgagTGATTACCTCCTGCAGACTGTCCAGTCCTAGACTGACTGTCTCTGAGATGACTGACATCATGGAAGTTGAGATGAAGTCAGCTGCTACAGAAGAAGCCATGGATGACACAACCAATAAAGAGGAGCAAGATGAATCAGGGGCACACAAACCCAAGAGCAGGATATATCCAGGGGAAATCATTGAAGGAAAACGAGAGAAGAAGACAGTCCAGAGACTTAACATGCAGATGGGTAAACCGAAAGAAAAGCTGAAAGTTGAGAGTATAGGCCACGGGGACAAATTGGGAGACATTGCTCGTGTCAATCACGCCATCGGAAAGCTCAAAGCCCCACAGCTGAAACCTCTTCACAAGATTCTTTATGATCGTCCAGGAGCAGTATCTTCGCTAAGGAAACACCTTCGACTGTTCAATGGATTTCCATTCGAAATCGACAGTGACCCTTACaacaaaaagagggaaaaagtgCTGAAGCTCCCTAAAATACAACTCAGGACTATTTGTCAAATTCTTGATCTTGAGAGAAGTGGAAATCAGAGTGTTTTGGTTGATAGGATCATGCAGTTTCTTATAAACCCCACAAATTCAGGCAAGCCAGTActcttgaaaaagaaaagaaagaagaaaactaCAAAAGACGCCAAACGAGAGAAGAAAATTTCATCTAAGAGCAAGCAGCAGCAATTAGAAAGTGGAAAGTCGAAAGCAATCGTTACTGATTCCAGCAGCGATGAAGCTGATGAAGAAGATAAAGGTAAAAACGAGGACGGTGAAAAGTCAGACAGTCAAAAACATGAAGGTGATGAAAGTACTtctgaagaagaggaggaggagaagagcgTTGATTCGGATGAAGGTCCAGAAGATGACAAGGATGAAGAGACCTCAAAGTCAAAGAAACCCAGTAGTAAAAAGAAACCCACCACCAAGAAGGAACCAAAGAAGGCCGACGACTCTGACCAGGCTCtatcagatgaagatgatgatgattcagAGTCTGCTGAAGACACACCTCCAAAAAAGGTTAAAAAGAAACCAGCTACCCAGAAGAAAGTGAAGGCCAAGCCTGCTcctaaaacaaagaaagcagaCAGCAGTAGCAGCAGGAAGAAAAACGCTGCAAGCAAGACCAAATTGAAGCCCGAAAGCtcagatgatgatgacgatgatgaacCTCTAATCAAGATGATTAAAAAGTCACCAAGCGATGAACAGTTGAAATCAGCTGTCAAAGACCTCCTGAAAAATGCAAACCTGGAGGAAGTGACGATGAAGCAGATTTGCCAACAGgTTTATGACCTTTATCCAGACTTTGACCTGACAGCCAGGAAAGACTTTATCAAGCAGACAGTGAAGAGTtTAATATCCTAACAGGAGGAAGccattcttttttgtttgaagAACAGTGTGCAGAGTTACAGAAGAGTGTGAATAGTCATCCtattttcataaatacagttgtttgttattttgtctttttattatattttttgcagaATTATCAAATGTTTGTGCATCTTTTTTGTATAGCTTTATATTTGAGAATACATGGATAATTTTGTATAgtacatgtacatttatatagTACATAACATTTTACATGTACTTTTCCCTCCAAGAATTTTTCTGTCCTAAATTTtgatgtacatttatttttcctgttagAGAAGCGTCAGACTTTGAACTAAAATGTCTGATTGCTAATTTTGTTGTTGATCAGTGTACAGGTATTCTGTTTTCCCcatttttgttcaaaatgtggtctgtttctttttatttttttagttaacttttttgttatttattgcttttcGTATTAAAGAAATGGTGCCGGGAGAGAAATCAAATTCACACAAATTTCCCCTGACCACAAATGTAGTTGTTCAGCCAATTTAGTGTGCAAATTTTACAAGCGTAGGAGCTAATTAGAAGTGATTATGATCGTCAGTTTAGTTTCAAGCAAACTGCATGCCGAAATCATCACACGTTTAACAACGATAACATTTTGGGCAATGCgatatcatttattaataataaaataagcagaGAAATTTCTAATTTCAGttttgaaggggaaaaaaaccccacaactGATTTGtgattcaaaatggctgccgtTACATCTTTCAGCCATGTGATGTACTTTTGTCTGTTATTTGGACAACAGTAGGTCATCTGGTTGATATTAACGTGGTTCGAGGGAAGTCTATGATGATTTCAGGATGCGATTGGCTTGCCTGATCCTTTAAGGTATGTGTAGATTTGACTTCCCGGACCCATCCTTTAAAGCTGTTTCATTGTGTGAATGACAGAGCATACTTGCAtatgtttgtttgatttatattgtcattttattttcttggtGTGTTTTTGAATATAGATGAATGATATTAAGTATTTTCCTCCGCAGCATACGTTTACAATTCTTGTCTGACTTTCTGGTATGAAAAGGCAAATAACTGCTCAACTAACAAGGCACATCAGAGATGGAATGCtagcatgtaaatattttttcccctcttttttaaataaacaggttttatatttaacagGACACATTTTCAGTAGCAAACAATTTAACAACCTGCTGCCATATGTAATTCAACAttacattgatttttttctggCTTAATTAAGGTATGCACTTCTTTACTAGGTATGTGTAAAGAATTGTCATAACTGaatccagaaaataaaaagttttttattacCCTGA

Function

symbol description
dek Predicted to enable histone binding activity. Predicted to be involved in regulation of double-strand break repair. Predicted to be active in nucleus. Orthologous to human DEK (DEK proto-oncogene).

NR:

description
PREDICTED: protein DEK-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K17046 DEK; protein DEK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914408.2 True 2813 mRNA 0.38 11 3770909 3780114

Neighbor

gene id symbol gene type direction distance location
aldh5a1 aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105 coding downstream 1510 3761507 ~ 3769399 (-)
LOC113526447 tdp2,LOC108261898 coding downstream 22284 3743141 ~ 3748625 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding downstream 51464 3708527 ~ 3719445 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding downstream 71802 3686415 ~ 3699107 (-)
lars2 lars2,LOC107598928 coding downstream 122895 3596515 ~ 3648014 (-)
gbp frat2 coding upstream 24369 3804483 ~ 3806010 (-)
ccne2 LOC108275335,LOC108437328 coding upstream 172438 3952552 ~ 3957802 (-)
tp53inp1 tp53inp1 coding upstream 178491 3958605 ~ 3966155 (-)
LOC113526913 LOC108263384 coding upstream 220671 4000785 ~ 4003753 (-)
c1h8orf37 c1h8orf37 coding upstream 282230 4062344 ~ 4068399 (-)
G2019 NA non-coding downstream 91345 3676465 ~ 3679564 (-)
G2017 NA non-coding downstream 99727 3670892 ~ 3671182 (-)
G1984 NA non-coding downstream 175964 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 404669 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 593140 3177563 ~ 3177769 (-)
G2241 NA non-coding upstream 254680 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 291111 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 520774 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 605058 4385172 ~ 4385378 (-)
G2551 NA non-coding upstream 942373 4722487 ~ 4787242 (-)
G2020 NA other downstream 95073 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 96945 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 111590 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 489747 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 851062 2918223 ~ 2919847 (-)
nagpa nagpa other upstream 189278 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1100689 4880803 ~ 4889598 (-)
G2709 NA other upstream 1120772 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 1199542 4979656 ~ 4986710 (-)
G3420 NA other upstream 2289245 6069359 ~ 6085656 (-)

Expression


Co-expression Network