gbp (frat2)


Basic Information

Item Value
gene id gbp
gene name frat2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3804483 ~ 3806010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914356.2
CAAACCAACCCTAGCGGCTGCTTTTCGTTGGGCAGCGTGGTGGCCGCGGACGCCGGTGAAGCGCCCTCGCTTTATTTCGATAGAattgtgtgtaaaggtttaagATTCAGCTGAAAATGCCTTGTCGAAAGGAGAACTACATCTTTTTGGAGCAGTCCGTGACCGTCGATTCTAAAGAGGTGGACGCTCTTGTGACTAAAATCGGCGAGGCTCTTCAGCTGCACAACAATAGCGCTACACAGCAGACGATGTCGCGTCTCCACGGTCtgaccagcagcagcagcagcagcagcaacaacaacaacaacatcaagcagagcaacaacagcaacactgCCAGCGCACAGAAGAGAAATGGCTGCTGTATACGTCTCCGCAGCGGCCGGAAAGCGACCCGAGCAAGTCCGTACAACATACCCGGCTCCAGCGATCAGGAATGGGAGCATTTCGCAACGTGGAACCGAAAGGGACTGGATGGTTCGGGTAGCGAGGACGATCCCCACCAGCTCCTCCAGGAACTGATCTTATCTGGGAACCTCATCAAAGAAGCGGTCAGACGACTTCAGTTCTCGTCCGAGTCGCACCGCGATTTCTCAAAACAAATCGACTGAAAGTGCGAGGCAGCAGCCCGCTAGCGGACAGCAGAAATGTGGAGGAGGTGGATTAAGCTTGTGCTATCTGATCACCTCGGCTAACCTGGTTAGCTGGATAGCCACCGAGTTCATGAGCTATCACGATAATACTCATACATTTTTTCTGGAAGTTTATATAAGTGAACGTTACTAAAACCGCGATGTTGGATTCAAAAAATGAACCTGTTATCCATTATTTCGACTGTTAGCTAGCGCTGTTTTTGTTTGAAACGGGACTAAACGTTGTGAGTGTGTCACTAGCACGCCAACTAAGACTGggggtcttttttttctcaatgaAATGTAAACGGCAAGTTATTATTTGTCCTTAACTCCACACGTATTGTGTTAACATTGTGTTTTGAAACGGTATTCCTGTTTGCAGGCTAGTAGACCAAATGGTCAGTGAGTGCACCATGTTTGGTAGCAAGTAAGAGGTTAGCATTGTGCCCTTGGCGTGCTACCTTTGTTTACAGTCTTGCTATCAGTAGTTTGGTGTGGGGATGGGCCACTGCTAcaccactctctctttctctctctctcctctccctctccctaaAGCTCTTCTCACTCAGCAAGAAGGTACTACACTGTCTGTTTTTGGACTTTCAAGCTGTTTTCTACACCCTCATGGACTTCTCCATCGAGTCTCACGGGAAACACAGGACCTGTTGGGTATTCTGAGGAGAAGCTGACTctggagagggagaggagtgagagagacatggagattTTCCCCAACAGACTCTCTGGTGCTTTCTGAATTCCTGTATGGAGTTCGTCTGTTTCTCTGCTTTCTCTGTCATGTCTGTATGCTTCGTAACGAAGTCATTTTAACAGCCCTGACTTTTTCAGGCAGTTTGGTCTATAATAAACacggtggatttttttttttt

Function

symbol description
frat2 Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

NR:

description
GSK-3-binding protein-like

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914356.2 True 1528 mRNA 0.48 1 3804483 3806010

Neighbor

gene id symbol gene type direction distance location
dek dek coding downstream 24369 3770909 ~ 3780114 (-)
aldh5a1 aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105 coding downstream 35084 3761507 ~ 3769399 (-)
LOC113526447 tdp2,LOC108261898 coding downstream 55858 3743141 ~ 3748625 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding downstream 85038 3708527 ~ 3719445 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding downstream 105376 3686415 ~ 3699107 (-)
ccne2 LOC108275335,LOC108437328 coding upstream 146542 3952552 ~ 3957802 (-)
tp53inp1 tp53inp1 coding upstream 152595 3958605 ~ 3966155 (-)
LOC113526913 LOC108263384 coding upstream 194775 4000785 ~ 4003753 (-)
c1h8orf37 c1h8orf37 coding upstream 256334 4062344 ~ 4068399 (-)
trnas-aga NA coding upstream 262899 4068909 ~ 4068990 (-)
G2019 NA non-coding downstream 124919 3676465 ~ 3679564 (-)
G2017 NA non-coding downstream 133301 3670892 ~ 3671182 (-)
G1984 NA non-coding downstream 209538 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 438243 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 626714 3177563 ~ 3177769 (-)
G2241 NA non-coding upstream 228784 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 265215 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 494878 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 579162 4385172 ~ 4385378 (-)
G2551 NA non-coding upstream 916477 4722487 ~ 4787242 (-)
G2020 NA other downstream 128647 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 130519 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 145164 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 523321 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 884636 2918223 ~ 2919847 (-)
nagpa nagpa other upstream 163382 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1074793 4880803 ~ 4889598 (-)
G2709 NA other upstream 1094876 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 1173646 4979656 ~ 4986710 (-)
G3420 NA other upstream 2263349 6069359 ~ 6085656 (-)

Expression


Co-expression Network