aldh5a1 (aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105)


Basic Information

Item Value
gene id aldh5a1
gene name aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3761507 ~ 3769399 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914464.2
ATGACGTTGAGAGCGTCAGCTCCTGTGTAGGGACTCAAACTGACAGCGCTGGATTCTGACTCCGGGTCCGTTGTAGCTCAGCGGCCTCCTCAGTGTCATACAGTCTGATTCGTGCAATGGGCAGTTTCTGGCTTGCAAATAGCAGGTGTTTTGTTCGCCATATCTTTCCGAGACTACCAAGCATGCTGAGCCGCCAGTACAGCCTGAATATTTCCGCCGAGCTGCTGCGGACCGAGGGCTTCATCAATGGCCGCTGGGTGTCCGCCTCCTCCACCTTCCCAGTGCTGGATCCAGCCACTGGACAAGAGCTGGCTCGAGTCTCAGACTGCGGGCCTCAGCAGGCTCAGGAAGCTGTTCAAGCCGCGTACAAAGCGTTTCACTCATGGAAGACTCAGACTGCAAAGGAAAGGAGCCTTCTGCTACGGAAATGGTTTGAACTGGTCAATCAGCACAAGGAGGATCTGGCCAAGCTTATTAcagcagagtgtGGCAAGCCCATGAAGGAGTCCCTAGCTGAGATTGCGTACTCTGCATCTTTTCTTGAGTGGTTCTCAGAGGAAGCCCGTCGCGTCTACGGAGACATCGTGGCCCCGGCAGCCAAGGACCGCAAGATACTGCTGCTCAAACAGccagtgggcgtggcctctatAATCACCCCATGGAACTTCCCCAGTGCCATGATCACCAGAAAGGTGGGAGCGGCCATGGCAGTCGGCTGTACTGTAGTAGTGAAGCCGGCTGAAGACACACCCCTTTCTGCTCTAGCACTTGCTGAGCTAGCAGTGCAGGCTGGAATCCCTCCTGGAGTGTTTAACGTGGTACCCTGCTCAAAGGAGAAGACCCCTATCGTGGGTGAAATCCTCTGCACCGACCCTCTGGTGGCTAAAATCTCATTCACCGGCTCTACTGCCACCGGCAAGATACTGCTGAGGCATGCTGCAGAAACCGTCAAGAAGGTGTCGATGGAGCTGGGTGGACACGCTCCCTTCATCGTCTTTGACAGTGCAGATGTGGACAAAGCTGTAGCTGGGGCAATGGCCTCCAAATTTAGAAACTCAGGCCAAACCTGCGTATGCTCCAACCGCTTCCTGGTGCAGAGTGGGATCTACGATGTGTTTATGGAGAAGCTGGGGAAGGCCATGGACAAAGACCTGCGAATGGGCCATGGGTTTGATCCCACAACCACACAAGGGCCCCTCATCAATGTCCGTGCTGCTGAGAAGGTGGAGCATCAGATCACGGATGCTGTCTCACAAGGGGCTGTAGTAGTGAAAGGTGGGAAGAGACTTGAGGGATCTTTCATGCAGCCCACACTGCTGTCCAACGTCACAACGGACATGCTGTGTATGCAAGAGGAGACTTTTGGTCCCCTGATACCAGTTCTCAAATTCAACACAGAAGAGGAGGCTCTTGCCATTTCTAACGCATCGCCGGTTGGATTAGCAGGCTACTTTTACTCTCAGGACCTGAGTCAGATCTGGCGAGTGGCCGAGCAGTTGGAGGTGGGAATAGTTGGGGTGAACGAGGCTCTTGTCTCCGCAGCAGAAGCCCCGTTTGGTGGGGTTAAACAATCAGGCCTGGGCAGAGAGGGCTCTAAATATGGCATTCATGAATATCTGGAAGTGAAGTACATGTGTATTGGTGGGCTTAATATCTAAGCATGGTTCtgctactgattttttttttcttgctgaaaaAAAGGCAATAATGAAAGCACATTAATTAGAGCACTGTGAATCAAACCATTCCTTTCATTCAGAACAAATGAAAGGGGATTACAGGAATTGATACATATGTCAAGTGAAAAGCACCtttttgaaagagaaaaaaaaagattaaaccaGTAAGTAGATGGAAAGTAGATATTTCAAATTTTCCTATATGTATGTTTATGATcattgtattaatattaactgTTGATATCCAGCCAATACTTTGTAGTGCGATGTATGCTGGAACCACTTTGCATCATCAGTGGTACTTATCTCACTTCATCCACCTAATATTCACTGAGTAAACTGCATCGGATTGTAGAAACTTGTTCTGAACCTAAATGCATAACTTACACCCTCTCTGTTTTGAACTGTCTCTGATGAAGTGTAGTTTACAGTGAAAAAGCACATTagaagtttacaaaaaaaaaaataataataatcttgaGTCCCTGTTAAATGTATTGAGTAAATGGTGTTTCTGCAgttgtatggccaaaagtattgtGAATAATTGTTGTAttaaggattttatttttgtaaaaaagtTTACTacctttgattaaaaaaaaaaaaaaggctaacaAGCGATGAactaatataaacatataatattaAAGTTCAGGGAAATATTGTGTTCAGTCAAATATACTGAAAGTGCCATGGATCCCTGGACCGTTTtgcttctttttgtttttaatatctgAATAATTTCTTTGTCcctgaataaatgtaatttgcTGTATTAA

Function

symbol description
aldh5a1 Predicted to enable NAD binding activity and succinate-semialdehyde dehydrogenase (NAD+) activity. Predicted to act upstream of or within galactosylceramide metabolic process; gamma-aminobutyric acid catabolic process; and short-chain fatty acid metabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in succinic semialdehyde dehydrogenase deficiency. Orthologous to human ALDH5A1 (aldehyde dehydrogenase 5 family member A1).

NR:

description
succinate-semialdehyde dehydrogenase, mitochondrial

GO: NA

KEGG:

id description
K00139 ALDH5A1; succinate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914464.2 True 2461 mRNA 0.46 10 3761507 3769399

Neighbor

gene id symbol gene type direction distance location
LOC113526447 tdp2,LOC108261898 coding downstream 12882 3743141 ~ 3748625 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding downstream 42062 3708527 ~ 3719445 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding downstream 62400 3686415 ~ 3699107 (-)
lars2 lars2,LOC107598928 coding downstream 113493 3596515 ~ 3648014 (-)
limd1a limd1,LOC106579350,LOC106605519,LOC107598949 coding downstream 170036 3567313 ~ 3591471 (-)
dek dek coding upstream 1510 3770909 ~ 3780114 (-)
gbp frat2 coding upstream 35084 3804483 ~ 3806010 (-)
ccne2 LOC108275335,LOC108437328 coding upstream 183153 3952552 ~ 3957802 (-)
tp53inp1 tp53inp1 coding upstream 189206 3958605 ~ 3966155 (-)
LOC113526913 LOC108263384 coding upstream 231386 4000785 ~ 4003753 (-)
G2019 NA non-coding downstream 81943 3676465 ~ 3679564 (-)
G2017 NA non-coding downstream 90325 3670892 ~ 3671182 (-)
G1984 NA non-coding downstream 166562 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 395267 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 583738 3177563 ~ 3177769 (-)
G2241 NA non-coding upstream 265395 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 301826 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 531489 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 615773 4385172 ~ 4385378 (-)
G2551 NA non-coding upstream 953088 4722487 ~ 4787242 (-)
G2020 NA other downstream 85671 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 87543 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 102188 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 480345 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 841660 2918223 ~ 2919847 (-)
nagpa nagpa other upstream 199993 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1111404 4880803 ~ 4889598 (-)
G2709 NA other upstream 1131487 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 1210257 4979656 ~ 4986710 (-)
G3420 NA other upstream 2299960 6069359 ~ 6085656 (-)

Expression


Co-expression Network