calb1 (calb1,LOC107704882,LOC107588486,LOC107700706)


Basic Information

Item Value
gene id calb1
gene name calb1,LOC107704882,LOC107588486,LOC107700706
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3686415 ~ 3699107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914065.2
ATCAGAGCGGCGCTGTCTCAGTGTTAGAGCATCACAGCAGCATCCGCGTGGGAACAATGGCCAACTCTTACCTTCAGGGAGTGGAGATTTCTGCCTCTCAGTTCCTGGATATCTTTCATCATTATGACAATGACGGTAATGGGTATATCGAGGGAAAGGAGTTACAGAACTTTATTAAGGAACTTCAGCAAGCTCGGAAACAAGCAGGCCTGGAACTAACAGACCAAATGAGGGCTTTTGTGGAAGAATATGAGAAAAATGCTGATGGAAAAATAGATATTATTGAGTTGGTACAAATACTACCCACAGAGGAAAATTTCTTGCTATTTTTCCGTCAACAACTGAGGTCCTGTACAGAATTTATGGAGGCCTGGAGGAATTATGATGCTGATCACAGTGGCTACATCGAAGCTGATGAGCTTAAGAATTTTTTGAGAGACCTGCTTCAGAGAGCAAAGAAACCTTTTGATGAGAAGAAGTTAGAGGAGTACACATCAACCACGCTAAAAATTTTCGATTTGAATAATGATGGGAAATTGTGTCTGGCAGAAATGGCAAGGCTACTGCCAGACCAAGAGAACTTTCTCCTGAAATTTCAGGGAGTAAAAATGGCCAGAAAAGACTTCAACAAGATTTTTGAGTTATATGATAAGGACAGGAATGGCTATATGGATGAGAATGAGCTGGATGCCCTGCTCAAAGACCtatgtgagaaaaacaaaaagGTTCTAGAAGTCAGCAAAATCCCTATATATAAGAAGGCCATCATGGCTCTGTCTGATGGAGGGAAACTCTACAGAACGGAATTGGCGCTGGTGTTGTGTGCTGAAGACATGTGAGATTCGTCCATCAGCTAACGTCTCTACatcctctccatccacatccCACCGCCAGCAAAGCTGTCCGCTCACTCATCATGTGAACATAGCTAAACACTGGAtgtatttctgttcatttgagGAACGCGTAATGCACAGGCTGAGTATATGCAGGTACACAGACCAGAGACAGAAGCCACATACTTTTCAATCTATTGTTTCTATACCGTTTCTAAATGTACAGATTTTTGTAAAGACAAGATTAATACAGTACTTAAAAGGACCAGAATCTTGGTCACtacattcatgaaatatgtCGTCACACCCAGAAGATATGAGACAAAAATACTGATGCGCCATGTGTATTAACTATATTCAGATCATGATCATAATCAACAcaaaatcagccaatcatttcataataaaattGATCTACCTTATAATATAGCCAAAGCAATAAAGTGGTAAAGGAATGTGGATGGGATGAAGCTGTAAAATAGGAAAGTACTTGTATGTAAAATGCAGCAGGCTAAATTTCTGTTCGCAGTGCATGTTTGCGACTGAAGGCACATCTTGCTGCGAGGCATTAACAATTCCAGCAAGATTCTATAAGcacataccacatctatatgaACTGCATTGCCCCAGCCCACTCCTCAGTCTCATATTTCCGTATTTGCACTGTAATGACGTGCTGACCCCAGTGACACTGTGTATGAGGATATTGTACTTAATAAAGCACTGTCTGAACTACTA

Function

symbol description
calb1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion homeostasis. Predicted to be active in several cellular components, including cytosol; dendritic spine; and terminal bouton. Orthologous to human CALB1 (calbindin 1).

NR:

description
PREDICTED: calbindin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914065.2 True 1574 mRNA 0.41 11 3686415 3699107

Neighbor

gene id symbol gene type direction distance location
lars2 lars2,LOC107598928 coding downstream 38401 3596515 ~ 3648014 (-)
limd1a limd1,LOC106579350,LOC106605519,LOC107598949 coding downstream 94944 3567313 ~ 3591471 (-)
dctn3 dctn3,LOC107726235,LOC107713912,LOC107689028,LOC107569444 coding downstream 157542 3523880 ~ 3528873 (-)
ttk ttk,LOC107559022,LOC107569443,LOC105908890,LOC105419921 coding downstream 163840 3512184 ~ 3522575 (-)
bckdhb bckdhb,LOC106605051 coding downstream 177494 3457817 ~ 3508921 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding upstream 9420 3708527 ~ 3719445 (-)
LOC113526447 tdp2,LOC108261898 coding upstream 44034 3743141 ~ 3748625 (-)
aldh5a1 aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105 coding upstream 62400 3761507 ~ 3769399 (-)
dek dek coding upstream 71802 3770909 ~ 3780114 (-)
gbp frat2 coding upstream 105376 3804483 ~ 3806010 (-)
G2019 NA non-coding downstream 6851 3676465 ~ 3679564 (-)
G2017 NA non-coding downstream 15233 3670892 ~ 3671182 (-)
G1984 NA non-coding downstream 91470 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 320175 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 508646 3177563 ~ 3177769 (-)
G2241 NA non-coding upstream 335687 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 372118 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 601781 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 686065 4385172 ~ 4385378 (-)
G2551 NA non-coding upstream 1023380 4722487 ~ 4787242 (-)
G2020 NA other downstream 10579 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 12451 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 27096 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 405253 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 766568 2918223 ~ 2919847 (-)
nagpa nagpa other upstream 270285 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1181696 4880803 ~ 4889598 (-)
G2709 NA other upstream 1201779 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 1280549 4979656 ~ 4986710 (-)
G3420 NA other upstream 2370252 6069359 ~ 6085656 (-)

Expression


Co-expression Network