dctn3 (dctn3,LOC107726235,LOC107713912,LOC107689028,LOC107569444)


Basic Information

Item Value
gene id dctn3
gene name dctn3,LOC107726235,LOC107713912,LOC107689028,LOC107569444
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 3523880 ~ 3528873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913408.2
ACAATAATAACGTCATTTCCGGTTTGGCTGGCCCACAGAAGGCAAAATGGAAGAAAGCAACATTGTTGAGTTGAATGCTCGGCTTCAAGCGCTGGAAAAGCGTGTGTACGGTGAACGTGGGCGAAGTAATAAACCAGTTAAGTGTGTTGAATCTTTGGCGAGGATCAATTCTGCCCTCGGAAACACAGCAAACAAGAGAGAACGAGTCAAGATTCTTCACAAGAAAATTGAAGATCTGCTGAAGTATATAGATCCACAGTTCACAGACTACATTGCTGTGCCAGATGCAATGAAACTGGAGTTCATCTTAGCAGAGGAGGACTTCCTGCGCTCCCAGGCTGCCTTGCTGGAGCAGGTGCACAACCTGCAGCCTCTGCTGGAGAGTCCACATATTAAAGCTGTTCCAGACCTTTCTACCAAAGTGCAACGTCTGTCTCAAATTCACATCAGTCAGCAGGACCAAAATGAAGAGCTATCTGCAGACGTGAAAAGGCTGTTTGAAGAATACAACAAAATGATGTTTCTGTTGTCTAAACAGTTTACCCAGTGGGATGAAAGCCTGAGGAAACTGGAAGCACCCAAACAGGTCCAGCTAACCGATTAAGTCAAATGATGCTTGATTTTTGACACTAAgttaataatgtcattttttttcttcttgttttgttGTACATATGTTCCTTATTAGCTTATGAAGATTTGCAACTGTTTAATATGGTTTCAAAGATTAAATGCACTCAGAGCTTGCAGTCATTGATGTAGTCTACATTGTTAGCTTGagtaataaagtataaatattataCCCTTATGTGTTGTGtagtttcatatttattatatacaactTGTGTGTATTAATAAATTACCCTAAATGACTAATA

Function

symbol description
dctn3 Predicted to be involved in cytoskeleton-dependent cytokinesis. Predicted to be part of dynactin complex. Orthologous to human DCTN3 (dynactin subunit 3).

NR:

description
PREDICTED: dynactin subunit 3-like

GO: NA

KEGG:

id description
K10425 DCTN3; dynactin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913408.2 True 878 mRNA 0.40 7 3523880 3528873

Neighbor

gene id symbol gene type direction distance location
ttk ttk,LOC107559022,LOC107569443,LOC105908890,LOC105419921 coding downstream 1305 3512184 ~ 3522575 (-)
bckdhb bckdhb,LOC106605051 coding downstream 14959 3457817 ~ 3508921 (-)
tpbgb tpbg coding downstream 163391 3358225 ~ 3360489 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 487776 3005297 ~ 3036104 (-)
trhra trhr coding downstream 559260 2959257 ~ 2964620 (-)
limd1a limd1,LOC106579350,LOC106605519,LOC107598949 coding upstream 38440 3567313 ~ 3591471 (-)
lars2 lars2,LOC107598928 coding upstream 67642 3596515 ~ 3648014 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding upstream 157542 3686415 ~ 3699107 (-)
pnp4b pnp4b,LOC108272756,LOC108437351,LOC107755717,LOC107700705,LOC107704990,LOC107705461 coding upstream 179654 3708527 ~ 3719445 (-)
LOC113526447 tdp2,LOC108261898 coding upstream 214268 3743141 ~ 3748625 (-)
LOC117596928 NA non-coding downstream 157640 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 346111 3177563 ~ 3177769 (-)
G1594 NA non-coding downstream 438536 3084927 ~ 3085344 (-)
G1583 NA non-coding downstream 475536 3047966 ~ 3048344 (-)
G1580 NA non-coding downstream 519877 3003795 ~ 3004003 (-)
G1984 NA non-coding upstream 65815 3594688 ~ 3594945 (-)
G2017 NA non-coding upstream 142019 3670892 ~ 3671182 (-)
G2019 NA non-coding upstream 147592 3676465 ~ 3679564 (-)
G2241 NA non-coding upstream 505921 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 542352 4071225 ~ 4071903 (-)
G1718 LOC108270367 other downstream 242718 3243835 ~ 3281162 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 604033 2918223 ~ 2919847 (-)
hint3 hint3 other downstream 1072360 2440846 ~ 2451520 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 1123623 2388648 ~ 2400257 (-)
G502 NA other downstream 2924714 598781 ~ 599166 (-)
G2011 tmem158 other upstream 129307 3658180 ~ 3659319 (-)
clec3ba clec3b other upstream 140796 3669669 ~ 3673964 (-)
G2020 NA other upstream 145373 3674246 ~ 3675836 (-)
nagpa nagpa other upstream 440519 3969392 ~ 3983491 (-)
LOC113526660 LOC108280225 other upstream 1351930 4880803 ~ 4889598 (-)

Expression


Co-expression Network