LOC113526913 (LOC108263384)


Basic Information

Item Value
gene id LOC113526913
gene name LOC108263384
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 4000785 ~ 4003753 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914357.2
GATGTACCTACAGGGAATTCATGTTATTCAAAAAAAGACACTTGTGGATTTTACTCGTGATCTTGGTTCCATAATTTTCCATAAAAAGACTTTCCGAAGCATGGAGATAAAAACAGCATAGTTCTCCGCAGGTTTGGGGAGAAAAACCCCCGATGCGCGTGATTTTACGCACTCCATCATGTTTTCAGCTTTCAGTTTTAGGAGCTAGCTCATTTTAGTCTCGACTTCAGACATGCTGCCCTGTTCGTGTTTCAGCTGTGTGCTTCTGGCTTTGGACTGACAGGAAGTTTACGCGCAGGAGCGCAGTGATGCTGGAGGAACGGACACCCTGCAGCATGTGCTGCTGCACTCCTCTCAACAAAATACTCATGGTCGTCTTCATGATATTACTGCTGTTTGCTATATTGTTTGGAAACTCTCTGACTTTGGCTGTGGTGCTCGGAACGAAACATTTCCACACACCACAGGGTTATCTGAAAGCCTCTTTAGCGGTGGCCGACTTGTCCGTGGGGGTTTTTGTGGTTCCTCTGTCCGTGTACGCAGAGATTTCGCTCATGCTGACGGATACAGCACCAGGCTGGACAGTGCGTAATTCCCAGCACACACCTTTCCACCCGTGCACTGTTATTGGCCCTGTGTTTGCAGGCTGCACGCTGGTTTCCATCACCACCGTTTTCCTTCTCACTATTGAGCGCAGCATTGCTGTCCTGAAACCTTTGCACAAAGATGCCGTTATTACAAGAAGACGAACAAGCATGCTGATTGTCTGTTCTTGGACAGGCAGCTTTTTCTTAGCGCTCTCCCCCCTGATTTTTAGCAAACAGATCGCCTTGGAGTATAATGCATGCAGCAGAATGTGCAACTACGCGCTAGGAGCCAAAGAGTTTCCGCCTCAGGCTTGGCATATTCTCTTACTTTTCCCAGTGTTTGATTTTACTCTCCTCGTAGGGACTGTTGTTATAAACATTGTATCCTTCACTACCATCCGCCATCACTCGAAGAAAAGAAGGCGTCTGGCTCAGGCAGGGTGCCAGAGTACATCAGGACCAAGTTTCTCCGACATTAAGGCTGCAAAAACCATCGGCGCGCTCACGCTGGTCTTCACTGCCTCCTTCACTCCTGTTGCAGTGTTTGTTGTAGGAAACGTCAGTGGAAATGAATGGTGCAGCTTCTCCTTTGTGGCTTTTTGGATTCTGGCTGCAAGCAGTTGCTGGAATGTCATCATCTACAGTGTGAGGGACCAAAAGTTCAGACTCCGAGCGCGTCAGCTTCTCGTGTTCTCGAAAATAAAGAATTCACCCTAAGAATAAGCTGTAAAACCTTGTGTCATACTGCCTTccacacattacacaataaTCTGCTCGCTGCACAGTGTACAGGCCTAATGCTGCAACAGGTGGCTGATatccgcttatcctacacagggtcgcagggagcccGGAGCCCATCCCAggagactcggggcacaaggtgggggacaccctggacggggtgccaacccatcgcagggcacaatcacacacacacatacacacacacacccattacaGACTACAGACAATTTCACAGTCAGCCTACagtggaggaaactggagtacccagaggaaacccccaaagcacagggagaacaacaacatgcaaactccatacacacagggcagaggcaagAACCagacccccaaccctggaggtgcgaggcaaacgtgctaacctcTAAGCCACTGTACCCCCAGAATCCTGACTCATATGATGGGTCTCAAGGCTGAAGAACAATGGATGGGAATAacccctgaatgggatgccagtccttTACAgagtaccatgcacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: olfactory receptor 4K2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914357.2 True 1853 mRNA 0.49 2 4000785 4003753

Neighbor

gene id symbol gene type direction distance location
tp53inp1 tp53inp1 coding downstream 34630 3958605 ~ 3966155 (-)
ccne2 LOC108275335,LOC108437328 coding downstream 42983 3952552 ~ 3957802 (-)
gbp frat2 coding downstream 194775 3804483 ~ 3806010 (-)
dek dek coding downstream 220671 3770909 ~ 3780114 (-)
aldh5a1 aldh5a1,LOC107700704,LOC107755744,LOC107704994,LOC107588482,LOC107705391,LOC107556105 coding downstream 231386 3761507 ~ 3769399 (-)
c1h8orf37 c1h8orf37 coding upstream 58591 4062344 ~ 4068399 (-)
trnas-aga NA coding upstream 65156 4068909 ~ 4068990 (-)
trnae-cuc NA coding upstream 65467 4069220 ~ 4069291 (-)
LOC113526532 NA coding upstream 68352 4072105 ~ 4074781 (-)
zgc:113232 LOC108270840,LOC108437324 coding upstream 75310 4079063 ~ 4088228 (-)
G2019 NA non-coding downstream 321221 3676465 ~ 3679564 (-)
G2017 NA non-coding downstream 329603 3670892 ~ 3671182 (-)
G1984 NA non-coding downstream 405840 3594688 ~ 3594945 (-)
LOC117596928 NA non-coding downstream 634545 3363860 ~ 3366240 (-)
G1708 NA non-coding downstream 823016 3177563 ~ 3177769 (-)
G2241 NA non-coding upstream 31041 4034794 ~ 4035081 (-)
G2255 NA non-coding upstream 67472 4071225 ~ 4071903 (-)
G2320 NA non-coding upstream 297135 4300888 ~ 4301249 (-)
G2347 NA non-coding upstream 381419 4385172 ~ 4385378 (-)
G2551 NA non-coding upstream 718734 4722487 ~ 4787242 (-)
nagpa nagpa other downstream 17294 3969392 ~ 3983491 (-)
G2020 NA other downstream 324949 3674246 ~ 3675836 (-)
clec3ba clec3b other downstream 326821 3669669 ~ 3673964 (-)
G2011 tmem158 other downstream 341466 3658180 ~ 3659319 (-)
G1718 LOC108270367 other downstream 719623 3243835 ~ 3281162 (-)
LOC113526660 LOC108280225 other upstream 877050 4880803 ~ 4889598 (-)
G2709 NA other upstream 897133 4900886 ~ 4905207 (-)
LOC113526375 NA other upstream 975903 4979656 ~ 4986710 (-)
G3420 NA other upstream 2065606 6069359 ~ 6085656 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other upstream 2095511 6099264 ~ 6177027 (-)

Expression


Co-expression Network