XLOC_000539 (rtn4rl2a)


Basic Information

Item Value
gene id XLOC_000539
gene name rtn4rl2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44491077 ~ 44495902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000931
ACTCTCTCAGTCGCTCCGACTCGGGAACCAGAGCATCAGCGGAGATAGCAGAGAATCAGTCTCTAAACTCCTCAGGCTAACTCGCTCTCGGCTTTGGTTCGGAATGGAAACATCAACTTTTACGCGGAGCCAACGCAGCTCCTTTGCGCACAACTTTAAGAGCGCGCTCTCGCTCTGGCTGGTTGTCTGGCTGGTCGTGGTAAAGCCGGTGCCTGCGCAGAACTGCCCGCACCGGTGTGTGTGTTATCCGACCCCAATGACGGTGAGCTGCCAGGCGCAGAACTTTACCATTGTACCCCACGGCATGCCCTACGAATCCCAGCGCGTTTTTCTGCAGAACAACCGCATTACTGAACTGAGAGTGGGGTCTTTTGCTTTTGGCACACAGGTTTTGTGGCTCTTCTCCAACAACATCACTTGGATTGAGGCCGGTGCATTCAGTGAGTTGCGCGATCTGGAGGAGCTCGATCTAGGTGACAACCCAAACCTGCACCGCCTTGAGGGTGGAGCTTTCCGGGGCCTAGAGAAGCTCCAGAGCCTCCACATGCACCGCTGCAAACTGGCTGCCCTTCCCCACGACATCTTTCACAAGCTCTACAGCCTGCAGTTCCTCTACCTGCAGGAGAACCAGCTCCACTTCATACAGGATGATCTCTTCGCCGACCTGATCAACCTCAGCCAGCTCTTCCTGCATGGCAACCGCATCCGCACCCTGTCCGAAAATGTGTTTCGTGGCCTAGTCAACCTCGATCGACTGCTCCTGCATGACAACAGGGTCCGTCAGGTCAACCGCCGTGCCTTCCGGGACCTGGGCAGGCTGACCATGCTCTTCCTCTTCAACAACTCTCTGGCGGAGCTGCCCGGTCAGGCCATGCGTGACGTCTCCTCCATAGAGTTCCTCCGGCTGAACAACAACCCCTGGGCGTGTGGCTGCGAGGCTCGCCCCCTGTGGGAGTTCTTCAGAGGTGCCCGTCTGTCCAGCTCCGAGGTTCTGTGTGCTTCCCCAGCTTCTCGCCGTGGACAGGACCTGCGCTTTCTTAGGGAGATGGACTTCGCCCTGTGCCCCCTTCCCGACCCCGGCTCCCTGGCtggcaccaccaccaccaccttcAGCACCAAGACCCGCTGGTGGTTCTCCAAGAACAAGCCTGTCAGCACCTCCAAAGGTATCTTTGAGAAGAGCTCCGAGACCAAGGCACATCCCTACACTGGAGGAAAATCTTCAGTCACATCTACATCCACAAAATATGAGCTTGGCGAGGAAGAAGCTCTGCTTCCCAAGCTCGACCCAGAAGAGTATTGGGCCAACTATGGCAATGAAGATGCAGGCATCACCTCCCTGCGCTGCTTTGAGCTTGAGTGCCCTCCAGAATTCGACTCTCTGCCACCATCTTCCTCGTCTTCTCGCTCCTCGTCTTCAACATTCTTGCTACTCTCCATGTCTGTTTTGACTGTCTGCATCCACCTTCTCTTTGGCTGAATCTGTCCCTCTCAGATGAACTCTTCTCCCCCTCATTTTTTCTCCTCTCTGAAGGAGGGAAAACCCCGTTTGCTCGGTTTAACTC
>TCONS_00000932
ATGCATGCGCTAGTAAGACAGTGTGACGTgacgcgctctctctctctctctcctccatcaGGCGCGCTCTCGCTCTGGCTGGTTGTCTGGCTGGTCGTGGTAAAGCCGGTGCCTGCGCAGAACTGCCCGCACCGGTGTGTGTGTTATCCGACCCCAATGACGGTGAGCTGCCAGGCGCAGAACTTTACCATTGTACCCCACGGCATGCCCTACGAATCCCAGCGCGTTTTTCTGCAGAACAACCGCATTACTGAACTGAGAGTGGGGTCTTTTGCTTTTGGCACACAGGTTTTGTGGCTCTTCTCCAACAACATCACTTGGATTGAGGCCGGTGCATTCAGTGAGTTGCGCGATCTGGAGGAGCTCGATCTAGGTGACAACCCAAACCTGCACCGCCTTGAGGGTGGAGCTTTCCGGGGCCTAGAGAAGCTCCAGAGCCTCCACATGCACCGCTGCAAACTGGCTGCCCTTCCCCACGACATCTTTCACAAGCTCTACAGCCTGCAGTTCCTCTACCTGCAGGAGAACCAGCTCCACTTCATACAGGATGATCTCTTCGCCGACCTGATCAACCTCAGCCAGCTCTTCCTGCATGGCAACCGCATCCGCACCCTGTCCGAAAATGTGTTTCGTGGCCTAGTCAACCTCGATCGACTGCTCCTGCATGACAACAGGGTCCGTCAGGTCAACCGCCGTGCCTTCCGGGACCTGGGCAGGCTGACCATGCTCTTCCTCTTCAACAACTCTCTGGCGGAGCTGCCCGGTCAGGCCATGCGTGACGTCTCCTCCATAGAGTTCCTCCGGCTGAACAACAACCCCTGGGCGTGTGGCTGCGAGGCTCGCCCCCTGTGGGAGTTCTTCAGAGGTGCCCGTCTGTCCAGCTCCGAGGTTCTGTGTGCTTCCCCAGCTTCTCGCCGTGGACAGGACCTGCGCTTTCTTAGGGAGATGGACTTCGCCCTGTGCCCCCTTCCCGACCCCGGCTCCCTGGCtggcaccaccaccaccaccttcAGCACCAAGACCCGCTGGTGGTTCTCCAAGAACAAGCCTGTCAGCACCTCCAAAGGTATCTTTGAGAAGAGCTCCGAGACCAAGGCACATCCCTACACTGGAGGAAAATCTTCAGTCACATCTACATCCACAAAATATGAGCTTGGCGAGGAAGAAGCTCTGCTTCCCAAGCTCGACCCAGAAGAGTATTGGGCCAACTATGGCAATGAAGATGCAGGCATCACCTCCCTGCGCTGCTTTGAGCTTGAGTGCCCTCCAGAATTCGACTCTCTGCCACCATCTTCCTCGTCTTCTCGCTCCTCGTCTTCAACATTCTTGCTACTCTCCATGTCTGTTTTGACTGTCTGCATCCACCTTCTCTTTGGCTGAATCTGTCCCTCTCAGATGAACTCTTCTCCCCCTCATTTTTTCTCCTCTCTGAAGGAGGGAAAACCCCGTTTGCTCGGTTTAACTCTTGAATGCCTTGATTCCTGTTTACCACATGCCTCACCTGTATCTTTGTTCTGTTCAGTTTGAGCCTCTAGTTTCTGGTATCTAGAGGGCACTACACTGATTTAGGATACAGTAGGTAAGCAGGGAACGTCGGGCAGTACAGGCCCTAATGGAAAGTTATGAAAGCTGTTTACAGGGCTTGGTTAGGTTAGGCAGATACTCGGTCCTTCTTTTTTGAGGACAAGTGTATTCTGAGCCATCTCTGTCGGTCAGTGCAGACAGAGGATAGACATTTCCATCTTAGGTTTACGTACAATATTTGTATGCTTTTAGACTTTTTCAGCCACTCTAAGTGCTTCTATGATAGTTGAAATTATAGCTTGTGATGTCACCATGACACCCTCTCTCCAACACTCTACAGCTCCGTTTTACAGTAGTTACTGGGAACAATAGCATAATGAGCAAATCTTTTGATTCCCTTCAGAGCGATCGAATGTAATATTCCATCTATTAGGACAGAAGTGTCTCAAAATCAGTCAAAGCAGGAGAAGCACAAAAGAAACGGTGTGCAACAGCAAGGCAAGATAAAGAGACAGAACAAAGAAGTGATGGGTTGGAAAGTGTTGCAATTTCAAAATAAGATAAGAACAGGGAAAGATAACGCACAAGCAGGACAGAGAGAGTACGCACAAGGGAAGGCGAAAGATTACATCACCCACCAGCTATGACAGCAATTATCACTCGTGTAAATATAACACCTTGGCAGAGGGAGCTGTAAATAGCGCTATAAAAGGGCCTTATGTTTGTCACCTTCTGAATGGCCAAGAATGTCACTGTGAGTAACGTCTGTGGTAATTCTACGGTCAGTGCATGGAAAGATCAGTCATTGGTGTGAGAGTGTGAGAATGTACTTTTTTGTATCCTTGTCAAAGTACTGTTAACATGTTCTGtcaatactgtaaaatacagtacCAACATTGTACTAAGAGTTTTCTTCTTTTGTTCTTCTTCTTTTCAAAATCAAAGTGTAACCAATTGTATCAGGACAATAGCACAATCCATCCTTTCTCATTTAAGGTATTGATTTCAAAATCTaacgggtgtccaaactcggtcctgcatagtttagctccaacttactttaacacacctgcctggaagtttcaggCATACCTAGAAAGAGTTCaggtggttcaggtgtgtttaattggggttggaactaaaaaaTGTTGGACATCGGCCtctcaggaccgagtttgggcacccctgaactAGACGGTTAACATTTTGCGCCTTGTAACAACAGAATTGGCAAAGTGTAAATCAAGGATTTGTTTCCCAAGGCAAGGCGATATATGGAGCAAGCTGGACTACCAGTGCAAAGCTGATTGGAAAATCAGTAAATTGTGCTTACTGACAGATTTATAATAATGTCTACCATTGGTCACAGATGTGTGAAGAACAGGTGCAATCATAGACTGCCTGGGCTGCTCTTTACGGGTATTCCGAAGGAAATGGCTTTGCCTATTCCCTTTCCTCCTCTTTCCAAACTGCAATAACAAATCAAAATGCTTTAGGGAAAACTAACACAAACAGCAAGGACAAGAGAAGAGTGAAAAGGAaaaggagagaaagagaaaaagtaCAAAATGCAGGGGCGGTTGTGGGCGGTTAAGCCAAAGATGTGGATGATAAAGGATGGACATGCTGATAGAAGGAGAAATGCAAGTTCCTTAAAGACATTATGTAATGATCTGAAAGATATCATGATCCACTGTTAATTCTAGCAATatgctgttttgtgtttaccctGAAAAGCAAATACTGTTCCTTTTTGTCCCACGGATGACACATTTCTGTCTTATAATTGTTTGTGAATGTATATCTCAGCCAAACGGGTAACAGGTCAAACTGCCTTGAGGTGCTCTCGAGCGACCATGTTTGTGAGGTTGCTCATAGATGACCAAAGCATTAGTTATACCTTTCTACCCAGAATGTATGCATTTGAATGTACGAATATGAAGGGATGAGCTGTTGAATCTTTTCACTTACTCCACAAAGTGGCGGACAGATAGCATGACAAAAGAATAAATGCTTATCTGTGGATTACGAAACATCTTTGGTGTGGGCGTACTTTCTTTATACCTTCATCCAACGGCCAAGACTCTACAGTGCAATCCCGCATGTGCCTTCTCTGCCTCTCATCTTTCAGTCTGACCTCCcttgacacacacagacagacagacaaatagacagacacacacacacacacatttactcctCACCGCTTGTAAAGTTCTTTGAAGGCAACATCATTCACTATAACATGCAGTTACTATGCAACCGAACTGGCCACCATTCAGAGCTTCGATTCAG

Function

symbol description
rtn4rl2a Acts upstream of or within posterior lateral line neuromast deposition. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human RTN4RL2 (reticulon 4 receptor like 2).

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040310-4 Acts upstream of or within posterior lateral line neuromast deposition. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human RTN4RL2 (reticulon 4 receptor like 2).

Ensembl:

ensembl_id ENSDARG00000052012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000931 False 1565 mRNA 0.56 3 44491077 44493548
TCONS_00000932 True 3819 mRNA 0.47 2 44491898 44495902

Neighbor

gene id symbol gene type direction distance location
XLOC_000538 crybb1l2 coding upstream 42690 44439661 ~ 44448387 (+)
XLOC_000537 unc93b1 coding upstream 72852 44395976 ~ 44418225 (+)
XLOC_000536 timm10 coding upstream 96578 44390470 ~ 44394499 (+)
XLOC_000535 si:ch211-165a10.5 coding upstream 127867 44360973 ~ 44363210 (+)
XLOC_000534 si:ch211-165a10.5 coding upstream 130718 44357737 ~ 44360359 (+)
XLOC_000540 BX908740.1 coding downstream 11232 44507134 ~ 44507253 (+)
XLOC_000541 NA coding downstream 27466 44523368 ~ 44566433 (+)
XLOC_000542 NA coding downstream 71611 44567513 ~ 44570869 (+)
XLOC_000543 med19b coding downstream 86467 44582369 ~ 44591489 (+)
XLOC_000544 BX511158.1 coding downstream 94365 44590267 ~ 44590381 (+)
XLOC_000521 NA non-coding upstream 399532 44090971 ~ 44091545 (+)
XLOC_000520 NA non-coding upstream 424593 44066244 ~ 44066484 (+)
XLOC_000517 NA non-coding upstream 450956 44017044 ~ 44040121 (+)
XLOC_000515 NA non-coding upstream 532990 43956872 ~ 43958087 (+)
XLOC_000514 NA non-coding upstream 534759 43955968 ~ 43956318 (+)
XLOC_000545 NA non-coding downstream 152006 44647908 ~ 44653968 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015601 NA coding CM030132.1 CM030132.1 13663657 ~ 13665777 (-)