RNA id: TCONS_00000932


Basic Information

Item Value
RNA id TCONS_00000932
length 3819
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_000539
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44491077 ~ 44495902 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATGCGCTAGTAAGACAGTGTGACGTgacgcgctctctctctctctctcctccatcaGGCGCGCTCTCGCTCTGGCTGGTTGTCTGGCTGGTCGTGGTAAAGCCGGTGCCTGCGCAGAACTGCCCGCACCGGTGTGTGTGTTATCCGACCCCAATGACGGTGAGCTGCCAGGCGCAGAACTTTACCATTGTACCCCACGGCATGCCCTACGAATCCCAGCGCGTTTTTCTGCAGAACAACCGCATTACTGAACTGAGAGTGGGGTCTTTTGCTTTTGGCACACAGGTTTTGTGGCTCTTCTCCAACAACATCACTTGGATTGAGGCCGGTGCATTCAGTGAGTTGCGCGATCTGGAGGAGCTCGATCTAGGTGACAACCCAAACCTGCACCGCCTTGAGGGTGGAGCTTTCCGGGGCCTAGAGAAGCTCCAGAGCCTCCACATGCACCGCTGCAAACTGGCTGCCCTTCCCCACGACATCTTTCACAAGCTCTACAGCCTGCAGTTCCTCTACCTGCAGGAGAACCAGCTCCACTTCATACAGGATGATCTCTTCGCCGACCTGATCAACCTCAGCCAGCTCTTCCTGCATGGCAACCGCATCCGCACCCTGTCCGAAAATGTGTTTCGTGGCCTAGTCAACCTCGATCGACTGCTCCTGCATGACAACAGGGTCCGTCAGGTCAACCGCCGTGCCTTCCGGGACCTGGGCAGGCTGACCATGCTCTTCCTCTTCAACAACTCTCTGGCGGAGCTGCCCGGTCAGGCCATGCGTGACGTCTCCTCCATAGAGTTCCTCCGGCTGAACAACAACCCCTGGGCGTGTGGCTGCGAGGCTCGCCCCCTGTGGGAGTTCTTCAGAGGTGCCCGTCTGTCCAGCTCCGAGGTTCTGTGTGCTTCCCCAGCTTCTCGCCGTGGACAGGACCTGCGCTTTCTTAGGGAGATGGACTTCGCCCTGTGCCCCCTTCCCGACCCCGGCTCCCTGGCtggcaccaccaccaccaccttcAGCACCAAGACCCGCTGGTGGTTCTCCAAGAACAAGCCTGTCAGCACCTCCAAAGGTATCTTTGAGAAGAGCTCCGAGACCAAGGCACATCCCTACACTGGAGGAAAATCTTCAGTCACATCTACATCCACAAAATATGAGCTTGGCGAGGAAGAAGCTCTGCTTCCCAAGCTCGACCCAGAAGAGTATTGGGCCAACTATGGCAATGAAGATGCAGGCATCACCTCCCTGCGCTGCTTTGAGCTTGAGTGCCCTCCAGAATTCGACTCTCTGCCACCATCTTCCTCGTCTTCTCGCTCCTCGTCTTCAACATTCTTGCTACTCTCCATGTCTGTTTTGACTGTCTGCATCCACCTTCTCTTTGGCTGAATCTGTCCCTCTCAGATGAACTCTTCTCCCCCTCATTTTTTCTCCTCTCTGAAGGAGGGAAAACCCCGTTTGCTCGGTTTAACTCTTGAATGCCTTGATTCCTGTTTACCACATGCCTCACCTGTATCTTTGTTCTGTTCAGTTTGAGCCTCTAGTTTCTGGTATCTAGAGGGCACTACACTGATTTAGGATACAGTAGGTAAGCAGGGAACGTCGGGCAGTACAGGCCCTAATGGAAAGTTATGAAAGCTGTTTACAGGGCTTGGTTAGGTTAGGCAGATACTCGGTCCTTCTTTTTTGAGGACAAGTGTATTCTGAGCCATCTCTGTCGGTCAGTGCAGACAGAGGATAGACATTTCCATCTTAGGTTTACGTACAATATTTGTATGCTTTTAGACTTTTTCAGCCACTCTAAGTGCTTCTATGATAGTTGAAATTATAGCTTGTGATGTCACCATGACACCCTCTCTCCAACACTCTACAGCTCCGTTTTACAGTAGTTACTGGGAACAATAGCATAATGAGCAAATCTTTTGATTCCCTTCAGAGCGATCGAATGTAATATTCCATCTATTAGGACAGAAGTGTCTCAAAATCAGTCAAAGCAGGAGAAGCACAAAAGAAACGGTGTGCAACAGCAAGGCAAGATAAAGAGACAGAACAAAGAAGTGATGGGTTGGAAAGTGTTGCAATTTCAAAATAAGATAAGAACAGGGAAAGATAACGCACAAGCAGGACAGAGAGAGTACGCACAAGGGAAGGCGAAAGATTACATCACCCACCAGCTATGACAGCAATTATCACTCGTGTAAATATAACACCTTGGCAGAGGGAGCTGTAAATAGCGCTATAAAAGGGCCTTATGTTTGTCACCTTCTGAATGGCCAAGAATGTCACTGTGAGTAACGTCTGTGGTAATTCTACGGTCAGTGCATGGAAAGATCAGTCATTGGTGTGAGAGTGTGAGAATGTACTTTTTTGTATCCTTGTCAAAGTACTGTTAACATGTTCTGtcaatactgtaaaatacagtacCAACATTGTACTAAGAGTTTTCTTCTTTTGTTCTTCTTCTTTTCAAAATCAAAGTGTAACCAATTGTATCAGGACAATAGCACAATCCATCCTTTCTCATTTAAGGTATTGATTTCAAAATCTaacgggtgtccaaactcggtcctgcatagtttagctccaacttactttaacacacctgcctggaagtttcaggCATACCTAGAAAGAGTTCaggtggttcaggtgtgtttaattggggttggaactaaaaaaTGTTGGACATCGGCCtctcaggaccgagtttgggcacccctgaactAGACGGTTAACATTTTGCGCCTTGTAACAACAGAATTGGCAAAGTGTAAATCAAGGATTTGTTTCCCAAGGCAAGGCGATATATGGAGCAAGCTGGACTACCAGTGCAAAGCTGATTGGAAAATCAGTAAATTGTGCTTACTGACAGATTTATAATAATGTCTACCATTGGTCACAGATGTGTGAAGAACAGGTGCAATCATAGACTGCCTGGGCTGCTCTTTACGGGTATTCCGAAGGAAATGGCTTTGCCTATTCCCTTTCCTCCTCTTTCCAAACTGCAATAACAAATCAAAATGCTTTAGGGAAAACTAACACAAACAGCAAGGACAAGAGAAGAGTGAAAAGGAaaaggagagaaagagaaaaagtaCAAAATGCAGGGGCGGTTGTGGGCGGTTAAGCCAAAGATGTGGATGATAAAGGATGGACATGCTGATAGAAGGAGAAATGCAAGTTCCTTAAAGACATTATGTAATGATCTGAAAGATATCATGATCCACTGTTAATTCTAGCAATatgctgttttgtgtttaccctGAAAAGCAAATACTGTTCCTTTTTGTCCCACGGATGACACATTTCTGTCTTATAATTGTTTGTGAATGTATATCTCAGCCAAACGGGTAACAGGTCAAACTGCCTTGAGGTGCTCTCGAGCGACCATGTTTGTGAGGTTGCTCATAGATGACCAAAGCATTAGTTATACCTTTCTACCCAGAATGTATGCATTTGAATGTACGAATATGAAGGGATGAGCTGTTGAATCTTTTCACTTACTCCACAAAGTGGCGGACAGATAGCATGACAAAAGAATAAATGCTTATCTGTGGATTACGAAACATCTTTGGTGTGGGCGTACTTTCTTTATACCTTCATCCAACGGCCAAGACTCTACAGTGCAATCCCGCATGTGCCTTCTCTGCCTCTCATCTTTCAGTCTGACCTCCcttgacacacacagacagacagacaaatagacagacacacacacacacacatttactcctCACCGCTTGTAAAGTTCTTTGAAGGCAACATCATTCACTATAACATGCAGTTACTATGCAACCGAACTGGCCACCATTCAGAGCTTCGATTCAG

Function

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040310-4 Acts upstream of or within posterior lateral line neuromast deposition. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human RTN4RL2 (reticulon 4 receptor like 2).

Ensembl:

ensembl_id ENSDART00000181744

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000912 lncRNA upstream 266606 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000904 lncRNA upstream 352497 44135843 ~ 44139401 (+) True XLOC_000522
TCONS_00002867 lncRNA upstream 400353 44090971 ~ 44091545 (+) True XLOC_000521
TCONS_00002866 lncRNA upstream 425414 44066244 ~ 44066484 (+) True XLOC_000520
TCONS_00003118 lncRNA upstream 451777 44027490 ~ 44040121 (+) True XLOC_000517
TCONS_00003119 lncRNA downstream 27466 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00003120 lncRNA downstream 71611 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003121 lncRNA downstream 152006 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00000947 lncRNA downstream 258075 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00000954 lncRNA downstream 330418 44826320 ~ 44835738 (+) False XLOC_000552
TCONS_00000930 mRNA upstream 43511 44442140 ~ 44448387 (+) True XLOC_000538
TCONS_00000929 mRNA upstream 44981 44439661 ~ 44446917 (+) False XLOC_000538
TCONS_00000926 mRNA upstream 73673 44395976 ~ 44418225 (+) False XLOC_000537
TCONS_00000934 mRNA downstream 27614 44523516 ~ 44566433 (+) False XLOC_000541
TCONS_00000935 mRNA downstream 44391 44540293 ~ 44566432 (+) False XLOC_000541
TCONS_00000936 mRNA downstream 44511 44540413 ~ 44565055 (+) False XLOC_000541
TCONS_00000937 mRNA downstream 58203 44554105 ~ 44559562 (+) False XLOC_000541
TCONS_00000939 mRNA downstream 86467 44582369 ~ 44591487 (+) False XLOC_000543
TCONS_00000911 other upstream 264444 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000895 other upstream 1226657 43265123 ~ 43265241 (+) True XLOC_000510
TCONS_00000894 other upstream 1267307 43224477 ~ 43224591 (+) True XLOC_000509
TCONS_00000892 other upstream 1456258 42850198 ~ 43035640 (+) False XLOC_000507
TCONS_00000891 other upstream 1608841 42463298 ~ 42883057 (+) False XLOC_000507
TCONS_00000933 other downstream 11232 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000938 other downstream 63549 44559451 ~ 44565346 (+) True XLOC_000541
TCONS_00000941 other downstream 94365 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000949 other downstream 273132 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000970 other downstream 487923 44983825 ~ 44989546 (+) False XLOC_000558

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_08001463_08004396.mRNA False 3335 mRNA 0.48 4 CI01000049 7999936 ~ 8004396 (-)
bowfin (Amia calva) AMCG00015601 True 1527 mRNA 0.60 3 CM030132.1 13663657 ~ 13665777 (-)