XLOC_000558 (CU929294.1)


Basic Information

Item Value
gene id XLOC_000558
gene name CU929294.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44983825 ~ 44997770 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000970
GACAGATCAAAACTGACACACTCAAATAGGGAAATGAGGATTTTAATTATTCTTATGTTCTTTCTATACTTTTAAAATATCtaaactttaaataatttataaaactaaGAACAACTTCCAAAGGACAGAAGCAAGAATCCTGACAGAAGATGGATTGATAAAAATGAGCATGCGTGCCAAAGAAGACTGATAATTGAACATCGGATTTCTGAAAATCTGTAAGAAACAGGGTGTTATGGATGTACTGTCTCTTTCGTGGAAGTCTTCTACTGGGAGACTGGTAATCCTTCACTTATTCATAATCCTCTCCCACTGTCAGGCGCCTCCCTCAGCATCTCTTCCAGTGCGGATTACAGTTCCCTCACCATGGCAGTCTGTCCCGCTCTCTCAGGGTGATCTGGGCCTTCTCTTCACCAACTCCAGCCCCTTCACCTCTACACAGTCTCTGCTGGTCTTTCCTCCCTCGGGAACCACCTCCAAACCTCTGCTCCGTGCTACGTTTGGTTCCTACACAGTCACACAGGTGTTGTGAAAGAGATGGAGGCTGACAGAGGAGAGCGGTTCAGAGTTCGAGTGCTGTTTCACATGAGAGGTGATGTTAACAGAGGAACCTGCGTTACTCTGCATGCTTTCAAACAGACAGAGGAGCAGAAAGCTTCCTGCATCACTCAGCCACCGTTTGGGTTGTGTGTGGTTACTCTAACATT
>TCONS_00000971
GGAGAATAAATGaagaggtcattttcattttgagtGGACTGCCCCTATAATAGTTTTCCATGGGGTTTGCCCTGAGTGTAACTGTATTTAGTTTAAAATAGATCTATGAAAAggaaatataacattttaatggCAATGTCTATGGCACAAGACTTAAATAATAAAGGATCTGTAATAAACCTTAAACTTAAAGCCCAACTCTTCTTTTTCATCATCAAAAGCCCACTGTCAGGCGCCTCCCTCAGCATCTCTTCCAGTGCGGATTACAGTTCCCTCACCATGGCAGTCTGTCCCGCTCTCTCAGGGTGATCTGGGCCTTCTCTTCACCAACTCCAGCCCCTTCACCTCTACACAGTCTCTGCTGGTCTTTCCTCCCTCGGGAACCACCTCCAAACCTCTGCTCCGTGCTACGTTTGGTTCCTACACAGTCACACAGGTGATGTCTGAACCCATTCCTCCTCTGACTTCTCCTCTCACGGCTTCGCTTCTGTCTAAAGGTGTTGTGAAAGAGATGGAGGCTGACAGAGGAGAGCGGTTCAGAGTTCGAGTGCTGTTTCACATGAGAGGTGATGTTAACAGAGGAACCTGCGTTACTCTGCATGCTTTCAAACAGACAGAGGAGCAGAAAGCTTCCTGCATCACTCAGCCACCGTTTGGGTTGTGTGTGGTTACTCTAACATTTCCAAACGACTGGTTTGAGCCCGCTCAGAACACAGAGGCGAACCTGGACCAGACTTTCAAGCAGCGTTACATAAGCAGAAACCGCTCTCGCTCCCGCAGCCGAAAGAGAAGGCATCCGCATATGCCAGCAGGACACAGGGCCCGGCCTGATCAAATTCAGCTTTACTACTCATCCTTTGGCATCCTGTCCATTAAAACCGGACCCCCGCGGTGCGTGGAGGACACAGTAGAGCAGTCAGAGAGAAAGCTTCTCTACATTGGTCCTGTGGGACTTGAGGATCAAGAGatcaacaaaaccaaacaaagccCTGCATGTTTAGACACAAAGGCAGAAGAGAAGTTCTGGTTGGATTCCAATGTGTTAATCGTCTACAGCAAAGGGCCTGTGCCTGCCGGACAGCCAATCAGAGTGTCTGTAAACCTAAGGGGAAATTATAGTGAGGAGTCTCTGACCATTAGGCTGAAAGTGAAAAAAGGATTGCTATCTCTGGAGGTCCATCCCGTCACACATTCTGACCTGTGGATGGTTAATGTAGAACAGACGACAGGTTCAAAACACGATGTTGTTTCCATCATTACTCGCAGCACCGGTACACTTCCAGACAGAACTGGCACTTCTGCTCTTAGCCAGATCTCCTGTCTCTCATTTGAGGCTTTACACAGAAACTTTGGCACAGCGATGACTGTCAGTGCCAGCTGGTGGGTGGAGTATTCAACTCGCAAGTTTTACATTTCACCACACGGGGCAGTGACAAGCTTCTTCTCCTTTACCGACAGAGAAGTTGTGGGCATCGCTCCCATCACAGAGagcaacacaattATCAATACAGCCATCCTGACAAGTGAGCCCGTGTCACTTCCTGTCATTGTCCTAGCGGTGGGCATAGATGGCAAAGTTTCTGATTTGACCACAGCGGTCAAGTGCCATTCAGCCAATGAAGACATTGTCAAGGTGTCTCATGACTGCTCTGTGGTTTTTGTGGACGGGAGTGAATCAGGAAGGGGCAGCATCTGTGTGGAGCTGGAGTTTTCCTTGGGAACGCTCAGTGGCTCTTTGTGTTTGGCCGTGTGGACTCCTGTAGTTCCTCTGCGTGTGTCTCTCTCCGACTCTGTCCTGAGTCCCATCAGTGGCTGGAATTACTACAGTGAGAACGGGTGTGAACCGGTTTATCAGAGGTCCACGGTACAGATTTTGGCTCAATTCAGTGCCCAATCAGCAGCTCAAGGGGGTCAACCGACCTACATGCTGGGATCTCCGGACTGGTTTGTGGATGTGACCGAGCTTGTCCGTGACTGGCTAAGAATAGAAAACCCATATATTGCAGCGCTTgataaacaaaaacatcttaTCGGCCTCAAGCCTGGACTCACATCATTATATGTGGTTTCCAGTCAGTGGGATGGAGTGCTTGGAAGGGCTAACGTGATTGTAACCTCTGAACCTGTGACTCCCGCTGACCTCTCTGTTCAGCTGGTGGGAGGGCTTGGCCTGTCTGTTAATCCCAGCCCATCTCACCCTTCTGTTGTCACAGCAACAGTGAATGCTCACAATACACTCTACAACCACGGACAAGAGGCGTCTATCAGTGTCTGGATCCAGTTCAATGATGACTCTGCCATATTGATGTCTGCATTTAATGAGGTCCCCTATACTCTACGGCTGTCCTCTTTGGCAGAATCTGTGGTTGCAGTAACGCCTGCTCCATCCCAACGCATTTTGGCACAAGGTGATGGCGGAGGACCTCTTGTTAAAGCCGAGCTTCTGGTTTCCAGCTGTGACCCAGCATCTAACCATGTTGAACTGGAGGCAATTCATAAAGCAAGCGAAGCCAAAAGACTGGCTAAGGGGTCTGGCTGGATAAGGGTGAACCTAAACATGGACTTTTGGCCAATAGGGAGTGAGGAAACCAACTTTGAGATGCACGATGTGACTGATATGCTCGTCGATTCCAACAGTGATCTGTATGATGACTTTGAAGATCATGACAGTACAGTAAATGCCACAAGTGATTATGATAGTGGCAATGACATATTTAAACGAAAAAACGTGGAGCAGGCGGTGTTGATCCCCAACCATGAAGAGAACGCTGTCTATTTGTCTCCTGGTGTGGAAAAGGAGAGGAAAGAGGTTAAAACAGCTGATAGACAGGTAGAGATTGGCATTGGAGCTGTCCTGTCTCTGCTTTGTCTCTCATCCCTACTTTTCCTGGTCAACTGCCTACCATGTGCACTAAGAGAACAAAGATATAGAGAAAGACGAGAGGGAAATGTGAAAGACACTGTGGAGGAGGAACCTGGAGAAGAGCAAGAGGAGAATAGACAAGAGGAAAAACAGTGCAGAGCAGTGATAACAGGGAATAATGACAAAATGGAAATTCAATGACCCTTTGACTTTACAAATATCTCATGTTGCACATTATCTTGTGCATATTCTGGAGAATGTTGCTACATCTTTATATGTCCATTGCAGTCACATAGGTGATTTTGTAATTGTGGGTACATTCGGCATTTCAAAACCCAATTTTTTATAGAGCAAATAAAACTCTTTATAAACAGCAATTCCTTACAGTATCTTATtgaaagaaaattacattttaatcatttagtGCTTAccaaacacaaataatatatatacatatatataattattaagtatttattttgggaataatattgacataaaattgaaccagattttggtaaaaacccaaacaatacaaaaataaaactataaaaaaaaaaaaaaataataataataataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatta
>TCONS_00000972
TCTTGTGTTTCAGCACTTCTGCTCTTAGCCAGATCTCCTGTCTCTCATTTGAGGCTTTACACAGAAACTTTGGCACAGCGATGACTGTCAGTGCCAGCTGGTGGGTGGAGTATTCAACTCGCAAGTTTTACATTTCACCACACGGGGCAGTGACAAGCTTCTTCTCCTTTACCGACAGAGAAGTTGTGGGCATCGCTCCCATCACAGAGagcaacacaattATCAATACAGCCATCCTGACAAGTGAGCCCGTGTCACTTCCTGTCATTGTCCTAGCGGTGGGCATAGATGGCAAAGTTTCTGATTTGACCACAGCGGTCAAGTGCCATTCAGCCAATGAAGACATTGTCAAGGTGTCTCATGACTGCTCTGTGGTTTTTGTGGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-237 Orthologous to human TMEM132A (transmembrane protein 132A).

Ensembl:

ensembl_id ENSDARG00000098263 ENSDARG00000105005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000970 False 707 processed_transcript 0.45 5 44983825 44989546
TCONS_00000971 False 3506 processed_transcript 0.45 10 44986996 44997770
TCONS_00000972 True 385 mRNA 0.48 3 44992207 44994299

Neighbor

gene id symbol gene type direction distance location
XLOC_000557 CU929294.2 coding upstream 10899 44968462 ~ 44972926 (+)
XLOC_000556 vps37c coding upstream 20566 44949909 ~ 44963259 (+)
XLOC_000555 si:dkey-9i23.16 coding upstream 37601 44941031 ~ 44946224 (+)
XLOC_000554 wu:fc21g02 coding upstream 57812 44906517 ~ 44926013 (+)
XLOC_000553 kdm2aa coding upstream 113853 44838706 ~ 44869972 (+)
XLOC_000559 dnaja1 coding downstream 5201 45002971 ~ 45014434 (+)
XLOC_000560 btr01 coding downstream 58601 45056371 ~ 45076434 (+)
XLOC_000561 si:ch211-151p13.8 coding downstream 83127 45080897 ~ 45096935 (+)
XLOC_000562 muc13a coding downstream 123623 45121393 ~ 45135878 (+)
XLOC_000563 AL953855.1 coding downstream 172276 45170046 ~ 45170652 (+)
XLOC_000552 NA non-coding upstream 148087 44826320 ~ 44835738 (+)
XLOC_000545 NA non-coding upstream 329857 44647908 ~ 44653968 (+)
XLOC_000544 BX511158.1 non-coding upstream 393444 44590267 ~ 44590381 (+)
XLOC_000542 NA non-coding upstream 412956 44567513 ~ 44570869 (+)
XLOC_000567 NA non-coding downstream 385834 45383604 ~ 45398821 (+)
XLOC_000568 NA non-coding downstream 646996 45644766 ~ 45648246 (+)
XLOC_000573 BX511120.1 non-coding downstream 770646 45768416 ~ 45768530 (+)
XLOC_000575 NA non-coding downstream 869270 45867040 ~ 45869497 (+)

Expression


Co-expression Network