XLOC_000554 (wu:fc21g02)


Basic Information

Item Value
gene id XLOC_000554
gene name wu:fc21g02
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44906517 ~ 44926013 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000960
AGATTGCAATAGCAGTCGCTCGCACGATAGCAGAGCTCTGTAGCAGAGGGGTTGAGTTTGACTACTGGACACTCCTACAGCCGaacacaatttgcagcagtcggaCACGGTTAAATCCTAAATTTACAACTGGAACAGCCTACAGATTTAATAAACTATGCAGATTGTTTGGCCCTTCCTTGCTGCTGCTTTTTGTGCAGTGTCAGTCTCTGCAGTCTCTACCTATCGCAAAGCTATAGACCATGGCAATCAGCTGATTCTGGAGCTTCCAGAAAGGACAGATAAACTGGAGTttgcttctgctgatgaaactgaaCATTATATCATCTGGGAAAACAGATTGACAGCTTGGTACAGTAGAACCAAAAAAGGACACGTGACCTCTACCAATAATGGCTGGACATTCAAAATCCAACAGGCTACGTTTGACGATGAGGGGACCTATCTCGTGCGCAACATCTTTGGCTCAGCCATCTCCAGTTATACAGTGAAGGTCCAGACCAACACTGATACCATTCCGCGTATCGCTGGAGAAACTCTGAAAATACCACTGAGAGGACTCAAAATGTCTAATGTCACGCTTCGCTTTTACGATAATGATTCAGCCATCACCCTGGTAGAGAATGGAGTTCCTGTAGGCAAAAACTACCGGGACTACTATAACCGACTTAAAGTGTACTTGAATTCAATTGAGGTTGTCAATGTCAACACATCAGACTTGGGTAGATACGAGCTCACCGATAAGAAAGGCAGACTGATCTCAAGCAATACAATGATACTAGTTGATCATCATCCGTTTACTCCTAATTTGGGTCTATTAGCCATTCTGCTGGTTGGCGTTCCTGGTGGAATCTGCTATTGCTGCCGAAGAAGATTGTGCAAATGTTGCCGGACCTCCAAATCAAACACTCACAGCGCCACCTCCCCTAATTCTGAACCAGTGTCTATACCTTGCAATGTGATTGATCCAAGCATTAATCCTGGAGGTATGCCTCAAAGCCCTCTCTATCCTGCTGTACCTCAACCCGGAGTTTCCCCAGGTCATCCTTCCAATTGGAATCAACCTGCTCCACCCTACCACCCATATACTCATGAGGGTTATAATCCTGTGAATGTGCCTCAAAACCCTGTCTATCCACCTCAATCTGCACCCACTCATCCTCCCCAGTGGAATGACCCTGCCTCCCAGAACAACCCATTTCCAAATCAGGGCTTTAATCCTGGGAATGTGCCTCAAAACCCGCTCTATCCACCTCAGTCTGGACCCACATATACTGAACCTGCCTCCCAATACAACCCGTCTCCTGCTATGAACTATTCTTCTCCTGGGCCTGAAACCACAGGGATGACTACGAATGATCCACCTCAAACTGCGCCCCTGCTTGCACCCCAGCCTGAGGGTTACAGGTCTGCTCTGGACAGCCTTTCAATGAATATGCTCAGCACTAGCGACTCTGGGGTCCAGTTTGACATCAACAAAGGAAAGTCTACAAGCAACAACTTCCTGtagtttctccaaaatgctggaTTATCCTCGTAAGGGAAgcagaaaacaaaacataaccTTTTAACGTCACTCTCTTTTGGCTCATTTTAATAGTAGGAAAGCAGAAGTTAAATAATACCAAAGATGGAAAGATCATCTTTACAACCTCCTACCTCCATATTTGCAGGTGAAACATCTTTATATTATAATCACATACCACAAGAAGTTGTGAATGGGCTTCCAGTGACACTCATAGCTGatagctgtgtttgtgtgtttgtgtgtatagtgGACAACAAAGCAATATCCATAGACAGAGAAGCTCACTTTCAACAGGGACATTCACAAACtccaataataaaattaaagctCGTCTGTAGAAAATAATAGAAGACATCTTGGGAATTGTGTTTTTGTCCATACAATGGAGATCGCAGTACTGTCTGGTTAACAATATCCTTTAAAATTAGTTCTTCTGCTATTAACAGACTAACAAAATGCATGCACGTTTGATTAAAATATGATAACTGTCACACCTATTATTTTAGGacttaactatccctttaaagtaacACTGAGctgctatttttttaatttccccaTGGGTCAGTCCTAACCCTTTATCAGAGGGACCTATTAAGGGGTTAACGGGACTTTGTGTAGAACTatgtataataaaacatatataaaaaaggCTTAATAGTATTAAAACTTTAATTTAGGATGTTGTTGTGCAGGTAGTTTTTTAGTTCTTTTAACAGCGctgtatattattaaataacctCTCGTCTCTTGAGAGGCAAGGAAAATAAGTACTTATCGTTGTGTTTGCTGTTAAAGTAGTGTCTGAAACAAATTGTTATATATTATAAAGAAAGGCAGttccacatttaaaatatatatttgcaaacaCAGGTAACTCcttgtttattaatgtttattagttGGTAGACATTGCATATACACCCTTCCTGTATACAAACGCACTTACATGTATCTTCAGCCATTAAATTAACACACAGGATAGACattcactcactggccactttattaggtacacctgtccaactgcttgttgacgcaaatttctaatcagccaatcacatggcagcaactcagtgcatttaggcatgtagacatggtcaagacgatctgctgctgtttaaacatgatcatgtccatccctttatgaccacagtgtacccatcttctgatggctacttccagcaggataatgcgccaatttatgaagtgtgaatcatctcagactggtttcttggacatgacaatgagttcactgtactcaaatggcctccacagtcaccagatctcaatccaatagagcacttttgggatgtggttgaacgggagattcgcatcatggatgtgtagccgacaaatctgcagcaactgcttgatgctatcatgtcaatatggaccaaaatatctgaggaatatttcctgtgccttgttgaatctatgccatgtaggattaaggcagttctgaaggcaaaatggggtccaacctggtactagtaaggtgtacctaataaagtggccggtgagtgtgatTGTTAATGCATGGAAGTAAATAAAATGTAGGCTTTCAGGGAATTTTCCTAACTACCACAGATAGCATACCAGTAGCTGCATTAGggcattttattacattttgcttgaaaacatttaaaatggtgCAAACAGCTACAATGTCAATGTGTATAAGTAGTATAGTGACATTTTTAACTTGTAACAGACAACATCAATGCCTTACTTTAAACTAAGCTGCATATCACAGTAATATAAAAGGTCTACTACTGTTCTCAATGAAAGAAATGCTTTTAGTTTCAGCCTACTGTACAGTGCAGTGCTGTATTGCCTAATGTTTTATTGTGGTCATCATGTTCTCTGTATTTTTGATTcgtcttttgttttttaatagtgcCAACTTGTGTTGTAATACTCCTCGTTCCATGCTGCActatacgaacaaactgaatgtAATTTGGTTTAACAACTTGAACTGTAATAAGATGACAATCAGCATGACTGTCATTATAACTCGAACACCTCAAGCGTTTTGTAAACCGACTGTGCAAATGTGTGCAAATGCTGCAGATTCAGTAGTCatgatacaaaaaaataaataaaaataaaacggtGGAGAAGCTG
>TCONS_00000961
ATGCAGATTGTTTGGCCCTTCCTTGCTGCTGCTTTTTGTGCAGTGTCAGTCTCTGCAGTCTCTACCTATCGCAAAGCTATAGACCATGGCAATCAGCTGATTCTGGAGCTTCCAGAAAGGACAGATAAACTGGAGTttgcttctgctgatgaaactgaaCATTATATCATCTGGGAAAACAGATTGACAGCTTGGTACAGTAGAACCAAAAAAGGACACGTGACCTCTACCAATAATGGCTGGACATTCAAAATCCAACAGGCTACGTTTGACGATGAGGGGACCTATCTCGTGCGCAACATCTTTGGCTCAGCCATCTCCAGTTATACAGTGAAGGTCCAGACCAACACTGATACCATTCCGCGTATCGCTGGAGAAACTCTGAAAATACCACTGAGAGGACTCAAAATGTCTAATGTCACGCTTCGCTTTTACGATAATGATTCAGCCATCACCCTGGTAGAGAATGGAGTTCCTGTAGGCAAAAACTACCGGGACTACTATAACCGACTTAAAGTGTACTTGAATTCAATTGAGGTTGTCAATGTCAACACATCAGACTTGGGTAGATACGAGCTCACCGATAAGAAAGGCAGACTGATCTCAAGCAATACAATGATACTAGTTGATCATCATCCGTTTACTCCTAATTTGGGTCTATTAGCCATTCTGCTGGTTGGCGTTCCTGGTGGAATCTGCTATTGCTGCCGAAGAAGATTGTGCAAATGTTGCCGGACCTCCAAATCAAACACTCACAGCGCCACCTCCCCTAATTCTGAACCAGTGTCTATACCTTGCAATGTGATTGATCCAAGCATTAATCCTGGAGGTATGCCTCAAAGCCCTCTCTATCCTGCTGTACCTCAACCCGGAGTTTCCCCAGGTCATCCTTCCAATTGGAATCAACCTGCTCCACCCTACCACCCATATACTCATGAGGGTTATAATCCTGTGAATGTGCCTCAAAACCCTGTCTATCCACCTCAATCTGCACCCACTCATCCTCCCCAGTGGAATGACCCTGCCTCCCAGAACAACCCATTTCCAAATCAGGGCTTTAATCCTGGGAATGTGCCTCAAAACCCGCTCTATCCACCTCAGTCTGGACCCACATATACTGAACCTGCCTCCCAATACAACCCGTCTCCTGCTATGAACTATTCTTCTCCTGGGCCTGAAACCACAGGGATGACTACGAATGATCCACCTCAAACTGCGCCCCTGCTTGCACCCCAGCCTGAGGGTTACAGGTCTGCTCTGGACAGCCTTTCAATGAATATGCTCAGCACTAGCGACTCTGGGGTCCAGTTTGACATCAACAAAGGAAAGTCTACAAGCAACAACTTCCTGtag
>TCONS_00000962
TAGTGTCAGTCTCTGCAGTCTCTACCTATCGCAAAGCTATAGACCATGGCAATCAGCTGATTCTGGAGCTTCCAGAAAGGACAGATAAACTGGAGTttgcttctgctgatgaaactgaaCATTATATCATCTGGGAAAACAGATTGACAGCTTGGTACAGTAGAACCAAAAAAGGACACGTGACCTCTACCAATAATGGCTGGACATTCAAAATCCAACAGGCTACGTTTGACGATGAGGGGACCTATCTCGTGCGCAACATCTTTGGCTCAGCCATCTCCAGTTATACAGTGAAGGTCCAGACCAACACTGATACCATTCCGCGTATCGCTGGAGAAACTCTGAAAATACCACTGAGAGGACTCAAAATGTCTAATGTCACGCTTCGCTTTTACGATAATGATTCAGCCATCACCCTGGTAGAGAATGGAGTTCCTGTAGGCAAAAACTACCGGGACTACTATAACCGACTTAAAGT
>TCONS_00000963
CAACCTGCTCCACCCTACCACCCATATACTCATGAGGGTTATAATCCTGTGAATGTGCCTCAAAACCCTGTCTATCCACCTCAATCTGCACCCACTCATCCTCCCCAGTGGAATGACCCTGCCTCCCAGAACAACCCATTTCCAAATCAGGGCTTTAATCCTGGGAATGTGCCTCAAAACCCGCTCTATCCACCTCAGTCTGGACCCACATATACTGAACCTGCCTCCCAATACAACCCGTCTCCTGCTATGAACTATTCTTCTCCTGGGCCTGAAACCACAGGGATGACTACGAATGATCCACCTCAAACTGCGCCCCTGCTTGCACCCCAGCCTGAGGGTTACAGGTCTGCTCTGGACAGCCTTTCAATGAATATGCTCAGCACTAGCGACTCTGGGGTCCAGTTTGACATCAACAAAGGAAAGTCTACAAGCAACAACTTCCTGtagtttctccaaaatgctggaTTATCCTCATGCTGTACCGATTCCCAGCAGGACACAGACGCACGCCAGGCCTGCTAATCTCAGTGCTGTGGTTTCTGCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2925 No description available

Ensembl:

ensembl_id ENSDARG00000094133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000960 False 3658 mRNA 0.41 10 44906517 44924254
TCONS_00000961 False 1353 mRNA 0.47 9 44911405 44922106
TCONS_00000962 False 478 lncRNA 0.45 2 44913836 44914405
TCONS_00000963 True 548 mRNA 0.51 6 44919221 44926013

Neighbor

gene id symbol gene type direction distance location
XLOC_000553 kdm2aa coding upstream 36545 44838706 ~ 44869972 (+)
XLOC_000552 NA coding upstream 70779 44826320 ~ 44835738 (+)
XLOC_000551 ndufs8a coding upstream 83446 44814322 ~ 44823071 (+)
XLOC_000550 tmem187 coding upstream 105338 44800298 ~ 44801179 (+)
XLOC_000549 si:dkey-9i23.5 coding upstream 122959 44780849 ~ 44783558 (+)
XLOC_000555 si:dkey-9i23.16 coding downstream 15018 44941031 ~ 44946224 (+)
XLOC_000556 vps37c coding downstream 23896 44949909 ~ 44963259 (+)
XLOC_000557 CU929294.2 coding downstream 42449 44968462 ~ 44972926 (+)
XLOC_000558 CU929294.1 coding downstream 57812 44983825 ~ 44997770 (+)
XLOC_000559 dnaja1 coding downstream 76958 45002971 ~ 45014434 (+)
XLOC_000545 NA non-coding upstream 252549 44647908 ~ 44653968 (+)
XLOC_000544 BX511158.1 non-coding upstream 316136 44590267 ~ 44590381 (+)
XLOC_000542 NA non-coding upstream 335648 44567513 ~ 44570869 (+)
XLOC_000541 NA non-coding upstream 340084 44523368 ~ 44566433 (+)
XLOC_000563 AL953855.1 non-coding downstream 244033 45170046 ~ 45170652 (+)
XLOC_000567 NA non-coding downstream 457591 45383604 ~ 45398821 (+)
XLOC_000568 NA non-coding downstream 718753 45644766 ~ 45648246 (+)

Expression


Co-expression Network