XLOC_000568


Basic Information

Item Value
gene id XLOC_000568
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45644766 ~ 45648246 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003123
GGTTTTTGtcccacatttttaaaaagaaatgtatcACTATTGGCATTTGTGTAAATCTAGACATCTCAGACCAAAAATGAATGTAACTGACACAAAACTATCGACACGCAAATACACATATAGGTCTCACATAAGAACATAACCCCATGAGTAAGACTATTGTGAGCTATTTTTGTTctttagtttattaaagacattgCAAAGTCAAAACATCTAAATCACACATCCAAATTTGAATTGCTATTTATAAAATGCACATACTTTTGAAATATGGCAGACTTTTATATCAGCATTCGGTAAATCAGCATTGGTAAGCATTTCCAATATGGTTTACTCTCAAATTCACAGTATGTGCATCCCGAAACATTGCTTTTCCAGGTTTTTCAGGCATGTTCTAAAATGCGAGCCTGAACATGACCATCATGACCTGGAAATGTTTCCTCTTGTTGGTTCATTGGATGTAATGTGTTTTCAACACAATACCTCCTTCACACAAATGTCACAGTTGTTCCTCCAGTTTGGCCAAATGTCACCAAAATTTACTCCGACGTTGACTTGAGTGGGACGTTATGTGGGAAATGACAGTGTATAGCTGTTTTATGCCATGCTATGATttgaataaaacagaaataatggtTAAATAATTGCTACTATTCATAACAACATTAATATGAATCATTGGAGATGCACTGGGATTTCTGAACACATTTAGCCAATCTGCCAAACATAAAAGCTGATTTGTGCACACAGCATTGTTACTCTAAGTTACAACATGTAGCATTCAACAACTTTCCAGATATCTTGAGGGAAGAGTTAATGACCATATGCATGGATGACCTTTTTTTACAATCTTTTGATCTGTTATTGTGAAGTAAGCTTGCATAATTGACATTTAAATGAAAAGGAGTTAATGGATAACAATACAGAGAGCTGCAGATTCCATTTCTGCACTGATACCAGCAAaactgtaactgtactgtgtgGGTTTGTGAAAGAATAAGGATCTCCTGTAATAGCTCCATAATATGGAAGCAACATAGCAATTTTAAATGGCAAAGTTCCAATTCCATCTGGCTGTGCCATTTCAGAAATTATACAGTTTGAGAATTAGGTCAGTATGCTTTTTTTTGTGGCTGTTTTGAACACATTTAACTATTCATGAGCATTTACACTATTACACTATAGAGACAAATGCTTGTTTGAAGTGGACAAGCTTTACATCTGAATATAATGTCATCCATATATGACAAAATACACATAAATCCTTCTTAATAGCAGATGTAAAAAGGGCTACACATTTATCCAAATTCTATGACCAAATTGAAATGATCTGGTTTTggataaataattttctttataattttggTTTCAgcatacatgcataaataaataaataaataaataaataaataaataaataaatcaatgaatgaaaaaaatcagGGCATcactattatattaatataatactttacaatattatattcagTATATTCAACTGAAATGGAATGTTCAGAAGGGggtgcaattttattttatttttatatcctcTCATCTTTGGGCCTGGGACAAGCTAACGCCAAACAACTAGCACCAGCGAAACCAACCCAGGCTAATTGCGGATAGGTACCCAAGTACGTACCCAattctacatttctggggacaacAAAGCATGTGACCGAAGACCTTTGCAAAAACTGTCTGCTTGCAGtatttgcaaatccaccagaggtcgctgtgtacactttttattGATCTAAAATTTCTCTCGAGCATTCTCTTCTCGGATAAACCCACCAGAGggtgcaatatacacttcagccgacCAGGCCAGCTTACTGtcaattgactgactgaccaaccaaacGACCCACCCAcccccaaccgatagtgttttaaaaacaatCTAGGAAACGAAAAGGTGTTGCGGTCATGTAATTTAACCacattttcagcctgttgtttatttatttattttttgcttttgttttacctggtttctggaaccgatcttcacccgactcaaaccccgtcatcaCAGTCAACTCCACTTCGCTTCTGAAGGCTGCCAATTTATGCACCAAACTACTGGGCAAACAGTCAGCAGGTATAGCGCAAAAAGGAAAAAAACGGCAAAGGCATCAAACCTCTCCATAGCGTTCACTTTAAAGCCAGACGTACCTTCGGCTACATAACTcaagctctccagaaatgtagacaggggtatctatccacaatgagcctgtgttgaacgAAACTCAACTGTGTTGTCGCTTCATGTTGGATCgcgtctggaccaaaaagctgtgCATGAACACATCAAACGGACTAAAGTAGACTGATACAAGAGCACACACACTATATGCATCTCCAACACTCGCAGCAAACtaacagttggaggggcgtggctaagcatattaagccatcaaactgatgtcATCAGACTGCCGTTCCAGAGCAGAAGCAAATGaacagattttgattaaagattaccgaTTTTTTTTCCAGTGCTCGAAAATAATTGTTCACCTTAAGACTAaaaatgtgtgctagcaaaatcaACATTGTGCTTACTTATTTAATGCAGacttaaaatatatcaatatGACTAATCTGTAGTCACTTTTTGAGTTTTTAAGCTCCTATTTGAAAACCACTGCAATGTGGTTAGCCTTGAAACAGTCGGAAGATACCGCTAACCTTTTTTACAACTTTAAATGCAAACAGTAATCATAAAAATATAATCGAGTTTTTAACAGTATTAAACCATTTTCCCATTGGAGGTCattgtttataaattaaaaacaatgaaaagacaatgaatggTTTCTGACAAAGTGGCATGGTCTGGCACAAATGTCCACAAGGGTGTCATCATAACAGAGCGTTGCTGTCGTCATCTCTGCCGTGTGCTTGCCTTATAGGAGCCAACGGCTGGTGCCTCAGTGACTTGTTGCTCCATTTGTGGGCGTCCTGTAGACCCGGCTCCAGAAAATACAGACATGCTCCAAATCCAGCCAAGACCAGGACAGAGATCAGCAGATAGACAGGCACGAACCAGTCCAGAAACATCCAGGGCATTGTGTCCTCTAAAAAAGTACAGCCTGCAGTCTGTCTTTGATCCCCTGTGATCTGGCACTGCAGTTTAGGGTTTAGTCAAACCCAAGCCGAGTAGAAAGAATGGTCTCTTGTTAATGATGAATAGTGAAGTTAATGATGTAGCCCGACCAACAAATGTGCGTTTTGGTCTTGTTGTATGCGATGGAA

Function

GO:

id name namespace
GO:0034754 cellular hormone metabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003123 True 3267 lncRNA 0.38 2 45644766 45648246

Neighbor

gene id symbol gene type direction distance location
XLOC_000567 NA coding upstream 245945 45383604 ~ 45398821 (+)
XLOC_000566 si:ch211-243a20.3 coding upstream 278344 45351890 ~ 45366422 (+)
XLOC_000565 emp1 coding upstream 314315 45323142 ~ 45330451 (+)
XLOC_000564 EVI5L coding upstream 361992 45217425 ~ 45282774 (+)
XLOC_000563 AL953855.1 coding upstream 474114 45170046 ~ 45170652 (+)
XLOC_000569 trappc5 coding downstream 15481 45663727 ~ 45669444 (+)
XLOC_000570 mcoln1a coding downstream 23441 45671687 ~ 45700574 (+)
XLOC_000571 si:ch211-214c7.4 coding downstream 58973 45707219 ~ 45744854 (+)
XLOC_000572 pkn1a coding downstream 106622 45754868 ~ 45836167 (+)
XLOC_000573 BX511120.1 coding downstream 120170 45768416 ~ 45768530 (+)
XLOC_000558 CU929294.1 non-coding upstream 646996 44983825 ~ 44997770 (+)
XLOC_000557 CU929294.2 non-coding upstream 671840 44968462 ~ 44972926 (+)
XLOC_000552 NA non-coding upstream 809028 44826320 ~ 44835738 (+)
XLOC_000575 NA non-coding downstream 218794 45867040 ~ 45869497 (+)
XLOC_000579 NA non-coding downstream 384474 46032720 ~ 46153200 (+)
XLOC_000581 NA non-coding downstream 569257 46217503 ~ 46219161 (+)
XLOC_000582 NA non-coding downstream 599372 46247618 ~ 46248591 (+)

Expression


Co-expression Network