RNA id: TCONS_00003123


Basic Information

Item Value
RNA id TCONS_00003123
length 3267
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_000568
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45644766 ~ 45648246 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTTTTGtcccacatttttaaaaagaaatgtatcACTATTGGCATTTGTGTAAATCTAGACATCTCAGACCAAAAATGAATGTAACTGACACAAAACTATCGACACGCAAATACACATATAGGTCTCACATAAGAACATAACCCCATGAGTAAGACTATTGTGAGCTATTTTTGTTctttagtttattaaagacattgCAAAGTCAAAACATCTAAATCACACATCCAAATTTGAATTGCTATTTATAAAATGCACATACTTTTGAAATATGGCAGACTTTTATATCAGCATTCGGTAAATCAGCATTGGTAAGCATTTCCAATATGGTTTACTCTCAAATTCACAGTATGTGCATCCCGAAACATTGCTTTTCCAGGTTTTTCAGGCATGTTCTAAAATGCGAGCCTGAACATGACCATCATGACCTGGAAATGTTTCCTCTTGTTGGTTCATTGGATGTAATGTGTTTTCAACACAATACCTCCTTCACACAAATGTCACAGTTGTTCCTCCAGTTTGGCCAAATGTCACCAAAATTTACTCCGACGTTGACTTGAGTGGGACGTTATGTGGGAAATGACAGTGTATAGCTGTTTTATGCCATGCTATGATttgaataaaacagaaataatggtTAAATAATTGCTACTATTCATAACAACATTAATATGAATCATTGGAGATGCACTGGGATTTCTGAACACATTTAGCCAATCTGCCAAACATAAAAGCTGATTTGTGCACACAGCATTGTTACTCTAAGTTACAACATGTAGCATTCAACAACTTTCCAGATATCTTGAGGGAAGAGTTAATGACCATATGCATGGATGACCTTTTTTTACAATCTTTTGATCTGTTATTGTGAAGTAAGCTTGCATAATTGACATTTAAATGAAAAGGAGTTAATGGATAACAATACAGAGAGCTGCAGATTCCATTTCTGCACTGATACCAGCAAaactgtaactgtactgtgtgGGTTTGTGAAAGAATAAGGATCTCCTGTAATAGCTCCATAATATGGAAGCAACATAGCAATTTTAAATGGCAAAGTTCCAATTCCATCTGGCTGTGCCATTTCAGAAATTATACAGTTTGAGAATTAGGTCAGTATGCTTTTTTTTGTGGCTGTTTTGAACACATTTAACTATTCATGAGCATTTACACTATTACACTATAGAGACAAATGCTTGTTTGAAGTGGACAAGCTTTACATCTGAATATAATGTCATCCATATATGACAAAATACACATAAATCCTTCTTAATAGCAGATGTAAAAAGGGCTACACATTTATCCAAATTCTATGACCAAATTGAAATGATCTGGTTTTggataaataattttctttataattttggTTTCAgcatacatgcataaataaataaataaataaataaataaataaataaataaatcaatgaatgaaaaaaatcagGGCATcactattatattaatataatactttacaatattatattcagTATATTCAACTGAAATGGAATGTTCAGAAGGGggtgcaattttattttatttttatatcctcTCATCTTTGGGCCTGGGACAAGCTAACGCCAAACAACTAGCACCAGCGAAACCAACCCAGGCTAATTGCGGATAGGTACCCAAGTACGTACCCAattctacatttctggggacaacAAAGCATGTGACCGAAGACCTTTGCAAAAACTGTCTGCTTGCAGtatttgcaaatccaccagaggtcgctgtgtacactttttattGATCTAAAATTTCTCTCGAGCATTCTCTTCTCGGATAAACCCACCAGAGggtgcaatatacacttcagccgacCAGGCCAGCTTACTGtcaattgactgactgaccaaccaaacGACCCACCCAcccccaaccgatagtgttttaaaaacaatCTAGGAAACGAAAAGGTGTTGCGGTCATGTAATTTAACCacattttcagcctgttgtttatttatttattttttgcttttgttttacctggtttctggaaccgatcttcacccgactcaaaccccgtcatcaCAGTCAACTCCACTTCGCTTCTGAAGGCTGCCAATTTATGCACCAAACTACTGGGCAAACAGTCAGCAGGTATAGCGCAAAAAGGAAAAAAACGGCAAAGGCATCAAACCTCTCCATAGCGTTCACTTTAAAGCCAGACGTACCTTCGGCTACATAACTcaagctctccagaaatgtagacaggggtatctatccacaatgagcctgtgttgaacgAAACTCAACTGTGTTGTCGCTTCATGTTGGATCgcgtctggaccaaaaagctgtgCATGAACACATCAAACGGACTAAAGTAGACTGATACAAGAGCACACACACTATATGCATCTCCAACACTCGCAGCAAACtaacagttggaggggcgtggctaagcatattaagccatcaaactgatgtcATCAGACTGCCGTTCCAGAGCAGAAGCAAATGaacagattttgattaaagattaccgaTTTTTTTTCCAGTGCTCGAAAATAATTGTTCACCTTAAGACTAaaaatgtgtgctagcaaaatcaACATTGTGCTTACTTATTTAATGCAGacttaaaatatatcaatatGACTAATCTGTAGTCACTTTTTGAGTTTTTAAGCTCCTATTTGAAAACCACTGCAATGTGGTTAGCCTTGAAACAGTCGGAAGATACCGCTAACCTTTTTTACAACTTTAAATGCAAACAGTAATCATAAAAATATAATCGAGTTTTTAACAGTATTAAACCATTTTCCCATTGGAGGTCattgtttataaattaaaaacaatgaaaagacaatgaatggTTTCTGACAAAGTGGCATGGTCTGGCACAAATGTCCACAAGGGTGTCATCATAACAGAGCGTTGCTGTCGTCATCTCTGCCGTGTGCTTGCCTTATAGGAGCCAACGGCTGGTGCCTCAGTGACTTGTTGCTCCATTTGTGGGCGTCCTGTAGACCCGGCTCCAGAAAATACAGACATGCTCCAAATCCAGCCAAGACCAGGACAGAGATCAGCAGATAGACAGGCACGAACCAGTCCAGAAACATCCAGGGCATTGTGTCCTCTAAAAAAGTACAGCCTGCAGTCTGTCTTTGATCCCCTGTGATCTGGCACTGCAGTTTAGGGTTTAGTCAAACCCAAGCCGAGTAGAAAGAATGGTCTCTTGTTAATGATGAATAGTGAAGTTAATGATGTAGCCCGACCAACAAATGTGCGTTTTGGTCTTGTTGTATGCGATGGAA

Function

GO:

id name namespace
GO:0034754 cellular hormone metabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003122 lncRNA upstream 245945 45383604 ~ 45398821 (+) True XLOC_000567
TCONS_00000974 lncRNA upstream 635793 45004906 ~ 45008973 (+) False XLOC_000559
TCONS_00000969 lncRNA upstream 671840 44970569 ~ 44972926 (+) True XLOC_000557
TCONS_00000968 lncRNA upstream 673526 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00000965 lncRNA upstream 702481 44941632 ~ 44942285 (+) True XLOC_000555
TCONS_00003124 lncRNA downstream 218794 45867040 ~ 45869497 (+) False XLOC_000575
TCONS_00003125 lncRNA downstream 218811 45867057 ~ 45869497 (+) True XLOC_000575
TCONS_00003126 lncRNA downstream 384474 46032720 ~ 46040123 (+) False XLOC_000579
TCONS_00003127 lncRNA downstream 384474 46032720 ~ 46061493 (+) False XLOC_000579
TCONS_00003128 lncRNA downstream 384505 46032751 ~ 46040123 (+) False XLOC_000579
TCONS_00000989 mRNA upstream 278344 45351890 ~ 45366422 (+) True XLOC_000566
TCONS_00000988 mRNA upstream 314315 45323400 ~ 45330451 (+) True XLOC_000565
TCONS_00000986 mRNA upstream 317258 45323142 ~ 45327508 (+) False XLOC_000565
TCONS_00000987 mRNA upstream 320016 45323400 ~ 45324750 (+) False XLOC_000565
TCONS_00000985 mRNA upstream 382367 45217619 ~ 45262399 (+) True XLOC_000564
TCONS_00000990 mRNA downstream 15481 45663727 ~ 45669444 (+) False XLOC_000569
TCONS_00000991 mRNA downstream 15524 45663770 ~ 45669004 (+) False XLOC_000569
TCONS_00000992 mRNA downstream 15561 45663807 ~ 45669035 (+) True XLOC_000569
TCONS_00000993 mRNA downstream 23441 45671687 ~ 45700574 (+) True XLOC_000570
TCONS_00000994 mRNA downstream 58973 45707219 ~ 45744854 (+) False XLOC_000571
TCONS_00000982 other upstream 474114 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 635150 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 646996 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 655220 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000949 other upstream 874711 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000997 other downstream 120170 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00001013 other downstream 752366 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 934221 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 1441255 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 1447579 47095825 ~ 47101796 (+) True XLOC_000596

Expression Profile

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