XLOC_000559 (dnaja1)


Basic Information

Item Value
gene id XLOC_000559
gene name dnaja1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45002971 ~ 45014434 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000973
AAGTTCAACAATTCTCCACAAGAAGAAGATGCAGAGCTTCTGCTCGAAGATTCTGGAAGTCTCTTGTTTGCCTCTTACACCGAGTCAGAAGGCGAGCAGGGATTGCACCACATTTCACGATTAACCTGTTTGTGATCAAATATGGTGAAGGAAACGGGTTTTTATGATATGCTGGGTGTTAAACCCAGTGCCAGCCCTGAAGAACTGAAGAAGGCCTATCGTAAACTGGCATTGAAATATCACCCAGATAAAAATCCAACAGAGGGGGAAAAGTTCAAACAGATCTCCCAGGCATATGAAGTTTTGTCAGATGCCAAGAAGAGAGAAGTGTACGACAGAGGAGGTGAGAAGGCCATCAAGGAAGGTGGAAATGGAGGGTCGTGTTCCCCCATGGACATTTTTGACCTTTTCTTTGGAGGAGGCGGGCGAATGCACAGGGAGAGAAGAGGCAAGAACGTGGTGCATCAGCTGACCGTATCTTTGGAGGACCTTTACAATGGAACCACCAGGAAACTTGCTCTCCAGAAGAATGTAATATGTGACAAATGTGAAGGTCGTGGAGGGCGTAAAGGAGTAATCGAAGTGTGTCCTCTGTGCCGTGGGGTGGGTGTCCAGGTCAGATTACACCACTTGGCTCCTGGTATGGTCCAGCAGATCTCCACAGTGTGTGAGGGCTGTCAGGGACAAGGCCAGAGACTTGGTCACCGCGATCGCTGCAAAACATGCACAGGCCGCAAGATACTACGACAGAAGAAGATCCTGGAAGTGCACATTGATAAAGGTATGAAAGATGGACAGAAAATAGTGTTTCATGGTGAAGGGGACCAAGAGCCTGGGCTCAAACCTGGAGACATCATCATCGTCTTGGATCAGAGAGCACATCCGCTTTACACCAGACAAGGAGATGACCTGATTGTGAGCATGGAGCTGCAGCTGGTGGAGTCATTGTGTGGTTTTCAAAAGCCCATCAAAACACTGGACAGCAGAACTCTGCTCATAACGTCTCATCCAGgggaactgatcaaacCTGGAGATAAGAAATGTGTTATGAACGAGGGGATGCCTATGCACCGTCGGCCATTTGAGAAAGGGAAGCTCATCATTCATTTCAATGTGGTCTTTCCTGAAGAGAACTTCCTCCCACTAAACAAACTGAAGGAGCTGGAAAGGTTTCTGCCCAACAAACAGGAGAACATGGAGTCTGACAGCATGGACGATGACCTCTACATCTACGCTGACCTCGAGGACTGTGACCTGAGCCACGAACGCCATCATTACCACTACATAGAGGAGGAAGACTTTTACCCTTCAGGAGGGGTGCAGTGTCAGACCTCATAGAGATCCGCTTAACTTGCCCTTCACAAACACCACCTCTTCTGGATTACCAGAAATTAAAGGACCAAGAGGAAAGTCCAATACCTCTCAACTATAGTTGTGCCTAGCATAAGACCTCTTAGTGCCGACCTCTTGTGTCATCATCGAGTGGAAGAATCCCCTAAACCAAATTCTGGAGCAAACTTTTAAATATGATAAATGGAGACTGTCAGTCAGTTCAGTCTATAAAAAAATGTGAGCGTGGAAATGGAAGAGGAATCAGGTGTAAAGCTGGTTGTGCCATAATCCCAGAAATTTCCAGCTTTACAAATCTCGTCATCGATTTTAGTTTTTTGTACTAATTATGGTAACTCCATTCAAGGCTACCGTCGtttgctgaaacaacacaattgttgagtgtttttgggacaacttaatagtttcatgttcaatccagaTGAATTTGTATAAACGAATAAGTTAATTTGAGTCcttcaggttgtcccaacacaagtcgATTGTGTGGAgctcagcattttttacagtgtacttgatCTCGATGTTGTTGGTCTTTTGTTATGTGCCAGTTAATGTTTTTTAGAGCGTTTCAAACTTAAAATGGTGGTCCTTTGAAAGAAAATAAGATGTCGTGTTGAAAACATTTTCAGACTGTGATGCGTTTCTGAAAAGCCTTACTGTGCAGCAGGTGTTACTAGCATACTGCTGTCTAACACACTGACGTTATGTTTATATCCCAGTTCCTGGCCGAATAACATTTAAGTATATTTTAGTTTTCATCTGAAGTAAGAAATAACTGCCAAGGATTTCCACAAAACTAAATCATGTTGTGTTTGTTGGTTATTTGAGAAGTacatctaaaaacaaaacaaaaaacaataagctTTGCAGAATGTTCAATTTTAAAATGAGAGCACACTAAAAGTTGAACATTTAAA
>TCONS_00000974
GACCTTTTCTTTGGAGGAGGCGGGCGAATGCACAGGGAGAGAAGAGGCAAGAACGTGGTGCATCAGCTGACCGTATCTTTGGAGGACCTTTACAATGGAACCACCAGGAAACTTGCTCTCCAGAAGAATGTAATATGTGACAAATGTGAAGGTCGTGGAGGGCGTAAAGGAGTAATCGAAGTGTGTCCTCTGTGCCGTGGGGTGGGTGTCCAGGTCAGATTACACCACTTGGCTCCTGGTATGGTCCAGCAGATCTCCACAGTGTGTGAGGGCTGTCAGGGACAAGGCCAGAGACTTGGTCACCGCGATCGCTGCAAAACATGCACAGGCCGCAAGATACTACGACAGAAGAAGATCCTGGAAGTGCACATTGATAAAGGTAATAATAGGGGGAAAtcggttcattcattcattttccttcggcttagtccctttgtttatcaggggttaccacagtggaacgaactgccaacttattta
>TCONS_00000975
GAACGTGGTGCATCAGCTGACCGTATCTTTGGAGGACCTTTACAATGGAACCACCAGGAAACTTGCTCTCCAGAAGAATGTAATATGTGACAAATGTGAAGGTCGTGGAGGGCGTAAAGGAGTAATCGAAGTGTGTCCTCTGTGCCGTGGGGTGGGTGTCCAGGTCAGATTACACCACTTGGCTCCTGGTATGGTCCAGCAGATCTCCACAGTGTGTGAGGGCTGTCAGGGACAAGGCCAGAGACTTGGTCACCGCGATCGCTGCAAAACATGCACAGGCCGCAAGATACTACGACAGAAGAAGATCCTGGAAGTGCACATTGATAAAGGTATGAAAGATGGACAGAAAATAGTGTTTCATGGTGAAGGGGACCAAGAGCCTGGGCTCAAACCTGGAGACATCATCATCGTCTTGGATCAGAGAGCACATCCGCTTTACACCAGgtgCACCAGTGGTCAAACGTTTTGAATAAGTTGAAAACAatcatgtttttataaaatatttgttacagaaactgaaatatatttaatttgaaatgt

Function

symbol description
dnaja1 Predicted to enable several functions, including ATP binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to act upstream of or within protein folding and response to heat. Predicted to be active in cytosol. Orthologous to human DNAJA1 (DnaJ heat shock protein family (Hsp40) member A1).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-2642 Predicted to enable several functions, including ATP binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to act upstream of or within protein folding and response to heat. Predicted to be active in cytosol. Orthologous to human DNAJA1 (DnaJ heat shock protein family (Hsp40) member A1).

Ensembl:

ensembl_id ENSDARG00000030972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000973 False 2270 mRNA 0.43 9 45002971 45014434
TCONS_00000974 False 480 lncRNA 0.50 3 45004906 45008973
TCONS_00000975 True 540 processed_transcript 0.46 4 45007403 45009616

Neighbor

gene id symbol gene type direction distance location
XLOC_000558 CU929294.1 coding upstream 5201 44983825 ~ 44997770 (+)
XLOC_000557 CU929294.2 coding upstream 30045 44968462 ~ 44972926 (+)
XLOC_000556 vps37c coding upstream 39712 44949909 ~ 44963259 (+)
XLOC_000555 si:dkey-9i23.16 coding upstream 56747 44941031 ~ 44946224 (+)
XLOC_000554 wu:fc21g02 coding upstream 76958 44906517 ~ 44926013 (+)
XLOC_000560 btr01 coding downstream 41937 45056371 ~ 45076434 (+)
XLOC_000561 si:ch211-151p13.8 coding downstream 66463 45080897 ~ 45096935 (+)
XLOC_000562 muc13a coding downstream 106959 45121393 ~ 45135878 (+)
XLOC_000563 AL953855.1 coding downstream 155612 45170046 ~ 45170652 (+)
XLOC_000564 EVI5L coding downstream 202991 45217425 ~ 45282774 (+)
XLOC_000552 NA non-coding upstream 167233 44826320 ~ 44835738 (+)
XLOC_000545 NA non-coding upstream 349003 44647908 ~ 44653968 (+)
XLOC_000544 BX511158.1 non-coding upstream 412590 44590267 ~ 44590381 (+)
XLOC_000567 NA non-coding downstream 369170 45383604 ~ 45398821 (+)
XLOC_000568 NA non-coding downstream 630332 45644766 ~ 45648246 (+)
XLOC_000573 BX511120.1 non-coding downstream 753982 45768416 ~ 45768530 (+)
XLOC_000575 NA non-coding downstream 852606 45867040 ~ 45869497 (+)

Expression


Co-expression Network