XLOC_000560 (btr01)


Basic Information

Item Value
gene id XLOC_000560
gene name btr01
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45056371 ~ 45076434 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000976
GTTTGAGTGGCTTAACCGTGCGTTGTCTACTGGTATGCAGACACACCTGTTTCCAGAAGGTCGTCACTTCATAGTGAAGCTGTCCTACACGACATACATTGAGAGGAGCTGAACGCAGCCCAAAAACAACATCAGGGAAAAGCAAAGCACAGACAAGAGGTGTACGATGTCATTTCCTGGTGAATTCCTGTCAGAGGAGCAGTTCACCTGTTCCATATGTCTCGACATCTTCACCAATCCCGTCTCCACGCCCTGCGGCCACAGCTTCTGCTCCTCGTGCATTTCCTCCTACTGGGAGGGCCAAGGAAAGACTTGCTTCTGCCCTCTGTGCAAAGAAAGCTTCCGTAAGCGCCCCGAGCTCCACGTCAATCACACGCTCAAGGAGATCACGGAGCAGTTCAAGCGGATGGCCGAGACCACAGTGAGCGTGCCTAAAACTGCAACAACAGATTCACCTCCAAACCCATTCTCTGCCCAGAAGCCTGGAGTGCAGCAAAGACCGGTTGAGCTGCCTAAAGGCCTGTTCCAGGAGATGAAGACCCGCATGCAGAGATCTTCATCAACATCCTCATCCAATGAGCCTTTAGCATCCGGCGATCCTCAGTCCCTCCCCAATGTCAAAATGCCGAGACGAAACTTTAGCGTGACCGCAGCGGGATCCAACGGGCCGCAGTGTCCCAATCACGGCTACAGTTTGGAGCTGCTCTGCAAGACTGACCTGATGTGTATTTGCGCAGTGTGTGCAGAGAGCGAACATTACGGCCATACTGTGACGGAGGCCAAGAGAGAGATGAATATTCGGAAGTCTCAGTTGCGGATCCTGGAGGTGGAGCTTCAAGGATTGATAACAGTCAGAGAGAGAAAAATAGAGGAGATCCAGACATCACTTGCTGAAATTCAAGTGAATGCGGAACGAGAGAAAGCAGGCACCATCAGTATGTTTGCTGAATTAATGAAATCGGTTGAGAAGTCGCAGGCTGAACTGCTGGAGGTGGTGGAGATGGGACAGCGGGCCGCCGAACTGCGGTCTCAGGCCTTCATTCGTGAGGTGCAGACAGAGATCTCAGACCTGAAAAACAGATGCAGCACCATAAATCAGCTGACCCAATCCCAAGACCATCTTACTTTCTTCAAGACATTTTCCGCCCACACTAGTTTACCAGTGATGAAGAGCTGGGCAGAGGTGGCTCTGACTCCTGACCCCACGGCAGGCGTGGTGCTAAGAAACGTCTCTCAGATGGTGGAGGAGGTTCGACAAGGCCTGAGGAGACTCTCGGAGATCTGTTTGCACCCTTCCACAGAAAGATCGCTGGGAGTGTATCAacaaaGTGTGTGGAGAGCACCAGGATTTGcaaTGGACGTGACCCTAGACAAAGACTCGGCTCACCCCCGTCTGGTCATCTCGGAGGATGGGAAGCAGGTGCTGTGCAGTGACCGATACCAGAATGTGCCAGACACACTCGAGCGATTCGACCGTGTGGTGTGTGTTCTGGGCCGCCAAGGTATCAACTCCGGCTGCCATTACTGGGAGGTCCTGGTGAGTGACAAGACGGACTGGGATTTGGGCATTGCTGCTCGCACCATCAACAGGAAAGGCAAAATAGCCGCCAACCCTGCTAATGGATTCTGGTTCTTAAGTCTACGTGACAAGCAAGATTATGTCTTCCGCACAGAGCCATCGACACCTATAATCGTAAATCCAAAACCGCAGCGGATCACTGTCAGTGTGGACTATGAGAGAGGCCAGTTGTCTTTTTATAATGCAGATACAAAGACGTTGATATTTACTTACACAGACTCCTTTTCAGAGACTCTATATCCTTTCTTTAGCCCGTGCACCAACAAATCTGGCAAAAACGAAGCACCACTTATTATTTGTCCTCCTTTTGTGGCTGACCCAAGCTGGTTAGAATAG
>TCONS_00000977
ACTTCATAGTGAAGCTGTCCTACACGACATACATTGAGAGGAGCTGAACGCAGCCCAAAAACAACATCAGGGAAAAGCAAAGCACAGACAAGAGGTGTACGATGTCATTTCCTGGTGAATTCCTGTCAGAGGAGCAGTTCACCTGTTCCATATGTCTCGACATCTTCACCAATCCCGTCTCCACGCCCTGCGGCCACAGCTTCTGCTCCTCGTGCATTTCCTCCTACTGGGAGGGCCAAGGAAAGACTTGCTTCTGCCCTCTGTGCAAAGAAAGCTTCCGTAAGCGCCCCGAGCTCCACGTCAATCACACGCTCAAGGAGATCACGGAGCAGTTCAAGCGGATGGCCGAGACCACAGTGAGCGTGCCTAAAACTGCAACAACAGATTCACCTCCAAACCCATTCTCTGCCCAGAAGCCTGGAGTGCAGCAAAGACCGGTTGAGCTGCC
>TCONS_00000978
CCACACTAGTTTACCAGTGATGAAGAGCTGGGCAGAGGTGGCTCTGACTCCTGACCCCACGGCAGGCGTGGTGCTAAGAAACGTCTCTCAGATGGTGGAGGAGGTTCGACAAGGCCTGAGGAGACTCTCGGAGATCTGTTTGCACCCTTCCACAGAAAGATCGCTGGGAGTGTATCAacaaaGTGTGTGGAGAGCACCAGGATTTGcaaTGGACGTGACCCTAGACAAAGACTCGGCTCACCCCCGTCTGGTCATCTCGGAGGATGGGAAGCAGGTGCTGTGCAGTGACCGATACCAGAATGTGCCAGACACACTCGAGCGATTCGACCGTGTGGTGTGTGTTCTGGGCCGCCAAGGTATCAACTCCGGCTGCCATTAC

Function

symbol description
btr01 Predicted to enable zinc ion binding activity. Acts upstream of or within response to hypoxia. Is expressed in head. Orthologous to human TRIM49C (tripartite motif containing 49C) and TRIM60 (tripartite motif containing 60).

GO:

id name namespace
GO:0001666 response to hypoxia biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090511-2 Predicted to enable zinc ion binding activity. Acts upstream of or within response to hypoxia. Is expressed in head. Orthologous to human TRIM49C (tripartite motif containing 49C) and TRIM60 (tripartite motif containing 60).

Ensembl:

ensembl_id ENSDARG00000051965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000976 False 1915 mRNA 0.51 8 45056371 45076434
TCONS_00000977 False 448 mRNA 0.53 2 45056436 45064323
TCONS_00000978 True 379 mRNA 0.56 4 45072778 45076044

Neighbor

gene id symbol gene type direction distance location
XLOC_000559 dnaja1 coding upstream 41937 45002971 ~ 45014434 (+)
XLOC_000558 CU929294.1 coding upstream 58601 44983825 ~ 44997770 (+)
XLOC_000557 CU929294.2 coding upstream 83445 44968462 ~ 44972926 (+)
XLOC_000556 vps37c coding upstream 93112 44949909 ~ 44963259 (+)
XLOC_000555 si:dkey-9i23.16 coding upstream 110147 44941031 ~ 44946224 (+)
XLOC_000561 si:ch211-151p13.8 coding downstream 4463 45080897 ~ 45096935 (+)
XLOC_000562 muc13a coding downstream 44959 45121393 ~ 45135878 (+)
XLOC_000563 AL953855.1 coding downstream 93612 45170046 ~ 45170652 (+)
XLOC_000564 EVI5L coding downstream 140991 45217425 ~ 45282774 (+)
XLOC_000565 emp1 coding downstream 246708 45323142 ~ 45330451 (+)
XLOC_000552 NA non-coding upstream 220633 44826320 ~ 44835738 (+)
XLOC_000545 NA non-coding upstream 402403 44647908 ~ 44653968 (+)
XLOC_000544 BX511158.1 non-coding upstream 465990 44590267 ~ 44590381 (+)
XLOC_000567 NA non-coding downstream 307170 45383604 ~ 45398821 (+)
XLOC_000568 NA non-coding downstream 568332 45644766 ~ 45648246 (+)
XLOC_000573 BX511120.1 non-coding downstream 691982 45768416 ~ 45768530 (+)
XLOC_000575 NA non-coding downstream 790606 45867040 ~ 45869497 (+)

Expression


Co-expression Network