RNA id: TCONS_00003124


Basic Information

Item Value
RNA id TCONS_00003124
length 1505
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id XLOC_000575
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45867040 ~ 45869497 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGcattaaataagattttattattcattataccTTTATTCAACGTTCATTTCTATTGTCTGAACCCCAGACTCctcttttattaaacaataaagacattcaaaatattgtttttccATTATCATCAGTGCAAAAATGCTAATCAAGCAAAATCAGAAACCACATATCGTTATTCTCTATAATCTCTAAAGTGTTGTTTAAAAAAGCCAGTGGTAAAACCAATAAATTAAATAGTAGTTGGCAATCCTTTCAGTCTGATGAACATACAAAACAAAGGTGTCTCAGTGTAAAAAGActgaaacaaagcaaaagcatTAATGGTTGAGTAATTTGTACATCTTAGTGAGGGTTTAGGGATATATACATTGATTATGAACAACTTTAGGTGAAAATGGGAACAACGACATTTGGCTTTGAAGTGAAAGGAAAATGTCTTCCAGTATTGGATACTGCTTCCCTGACACTCgcagcaaaataataattataaccttCCCCCCTCCACATCTTCATGTCTGGTATGAAATTACAggtgtttttgttcattttcactcttttttttgctttgttaatgTGCAATAACAAAATAAGGCATTCATCTTGTCTACCTGAAGCACAAGTAGCTCTGCATTTCTGAAAAACTGAAAACATACAGGCAGGTAAAACACCCATTCAAATCCACAGAAGGTATTTTTGGCATATATGAAACTCCTTAGGAAAGCTCCCTGCTGTTTGCATTCATTTACTTGTCCACTTACACACCGGTCAACAACTGCTCTCAATtcctaacacacctcctttctcaCTACCGCTCTTCTATCACTTCCTGGCCACACTTATTTTTTAACTCACTACCACCTTCACTTTCTAGCTCACTACCACTCTTACTTCCTGGCTTACTAACTCACTACAACTCTCACTTCCTCTCTCACTACAGCTCTGTCTTCCTTGCTCTCTAACCGCTTTCACTAACGCACTCATTAACTAACTCACTACCGCTCTTACTTTCTCACTaccactctcactcacacactcactcactcacactgtCAAATTACTACCACTCTCATTTTCTCACTCACTACCGCTCTCACATCCTGGCTTACTAACACATTTACTAACTCACTACAActctcacttactcactcactacCGCTCTGTCTTCCTTGCTCACTAACCGCTTTCACTAACGCACTCATTAACTAACTCACTACCGCTCTTACTTTCTCACTAccactctctctcactcactcactcactcactcactcacactgtCAAATTACTACCACTCTCATTTTCTCACTCACTACCGCTCTCACTTCCTTGCCCTCTTCCTTATCTGCTTCCTTCACTTCCTCACTCTTCACCTCTCCCACTTCTTTGCCCACTACTGATCCTACTTTCTAAAACTCCAACTTCCTTGCTCTTAATTGTCGCCATCTACCGCTGTCACTTCATCTCTCTCCTGCTTTTACACCCTACTAATGTGCAAATGTAAATTTAATG

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0045055 regulated exocytosis biological_process
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003123 lncRNA upstream 218794 45644766 ~ 45648246 (+) True XLOC_000568
TCONS_00003122 lncRNA upstream 468219 45383604 ~ 45398821 (+) True XLOC_000567
TCONS_00000974 lncRNA upstream 858067 45004906 ~ 45008973 (+) False XLOC_000559
TCONS_00000969 lncRNA upstream 894114 44970569 ~ 44972926 (+) True XLOC_000557
TCONS_00000968 lncRNA upstream 895800 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00003126 lncRNA downstream 163223 46032720 ~ 46040123 (+) False XLOC_000579
TCONS_00003127 lncRNA downstream 163223 46032720 ~ 46061493 (+) False XLOC_000579
TCONS_00003128 lncRNA downstream 163254 46032751 ~ 46040123 (+) False XLOC_000579
TCONS_00003129 lncRNA downstream 163254 46032751 ~ 46152843 (+) False XLOC_000579
TCONS_00003130 lncRNA downstream 169397 46038894 ~ 46053599 (+) False XLOC_000579
TCONS_00000999 mRNA upstream 10862 45839927 ~ 45856178 (+) False XLOC_000574
TCONS_00001002 mRNA upstream 10862 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00001001 mRNA upstream 10862 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00001000 mRNA upstream 10862 45839948 ~ 45856178 (+) True XLOC_000574
TCONS_00000998 mRNA upstream 30873 45783886 ~ 45836167 (+) True XLOC_000572
TCONS_00001003 mRNA downstream 53202 45922699 ~ 45924004 (+) True XLOC_000576
TCONS_00001004 mRNA downstream 55653 45925150 ~ 45959721 (+) False XLOC_000577
TCONS_00001005 mRNA downstream 55868 45925365 ~ 45936006 (+) False XLOC_000577
TCONS_00001006 mRNA downstream 89407 45958904 ~ 46020725 (+) False XLOC_000577
TCONS_00001007 mRNA downstream 99743 45969240 ~ 46020710 (+) True XLOC_000577
TCONS_00000997 other upstream 98510 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 696388 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 857424 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 869270 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 877494 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00001013 other downstream 531115 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 712970 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 1220004 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 1226328 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001046 other downstream 2027772 47897269 ~ 47897385 (+) True XLOC_000608

Expression Profile

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