Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001001 |
| length | 1356 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 10 |
| gene id | XLOC_000574 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 45839927 ~ 45856178 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001756 | somitogenesis | biological_process |
| GO:0007257 | activation of JUN kinase activity | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0000187 | activation of MAPK activity | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0008545 | JUN kinase kinase activity | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004708 | MAP kinase kinase activity | molecular_function |
| id | description |
|---|---|
| ko04141 | Protein processing in endoplasmic reticulum |
| ko04010 | MAPK signaling pathway |
| ko04013 | MAPK signaling pathway - fly |
| ko04012 | ErbB signaling pathway |
| ko04668 | TNF signaling pathway |
| ko04214 | Apoptosis - fly |
| ko04530 | Tight junction |
| ko04620 | Toll-like receptor signaling pathway |
| ko04624 | Toll and Imd signaling pathway |
| ko04660 | T cell receptor signaling pathway |
| ko04664 | Fc epsilon RI signaling pathway |
| ko04912 | GnRH signaling pathway |
| ko04926 | Relaxin signaling pathway |
| ko04722 | Neurotrophin signaling pathway |
| ko04361 | Axon regeneration |
| ko04380 | Osteoclast differentiation |
| ko05208 | Chemical carcinogenesis - reactive oxygen species |
| ko05170 | Human immunodeficiency virus 1 infection |
| ko05161 | Hepatitis B |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05169 | Epstein-Barr virus infection |
| ko05132 | Salmonella infection |
| ko05135 | Yersinia infection |
| ko05010 | Alzheimer disease |
| ko05016 | Huntington disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko05417 | Lipid and atherosclerosis |
| ko05418 | Fluid shear stress and atherosclerosis |
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-090312-186 | Predicted to enable JUN kinase kinase activity. Acts upstream of or within somitogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MAP2K7 (mitogen-activated protein kinase kinase 7). |
| ensembl_id | ENSDART00000179047 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003123 | lncRNA | upstream | 191702 | 45644766 ~ 45648246 (+) | True | XLOC_000568 |
| TCONS_00003122 | lncRNA | upstream | 441127 | 45383604 ~ 45398821 (+) | True | XLOC_000567 |
| TCONS_00000974 | lncRNA | upstream | 830975 | 45004906 ~ 45008973 (+) | False | XLOC_000559 |
| TCONS_00000969 | lncRNA | upstream | 867022 | 44970569 ~ 44972926 (+) | True | XLOC_000557 |
| TCONS_00000968 | lncRNA | upstream | 868708 | 44968462 ~ 44971240 (+) | False | XLOC_000557 |
| TCONS_00003124 | lncRNA | downstream | 10862 | 45867040 ~ 45869497 (+) | False | XLOC_000575 |
| TCONS_00003125 | lncRNA | downstream | 10879 | 45867057 ~ 45869497 (+) | True | XLOC_000575 |
| TCONS_00003126 | lncRNA | downstream | 176542 | 46032720 ~ 46040123 (+) | False | XLOC_000579 |
| TCONS_00003127 | lncRNA | downstream | 176542 | 46032720 ~ 46061493 (+) | False | XLOC_000579 |
| TCONS_00003128 | lncRNA | downstream | 176573 | 46032751 ~ 46040123 (+) | False | XLOC_000579 |
| TCONS_00000998 | mRNA | upstream | 3781 | 45783886 ~ 45836167 (+) | True | XLOC_000572 |
| TCONS_00000996 | mRNA | upstream | 6964 | 45754868 ~ 45832984 (+) | False | XLOC_000572 |
| TCONS_00000994 | mRNA | upstream | 95094 | 45707219 ~ 45744854 (+) | False | XLOC_000571 |
| TCONS_00000995 | mRNA | upstream | 95094 | 45740183 ~ 45744854 (+) | True | XLOC_000571 |
| TCONS_00000993 | mRNA | upstream | 139374 | 45671687 ~ 45700574 (+) | True | XLOC_000570 |
| TCONS_00001003 | mRNA | downstream | 66521 | 45922699 ~ 45924004 (+) | True | XLOC_000576 |
| TCONS_00001004 | mRNA | downstream | 68972 | 45925150 ~ 45959721 (+) | False | XLOC_000577 |
| TCONS_00001005 | mRNA | downstream | 69187 | 45925365 ~ 45936006 (+) | False | XLOC_000577 |
| TCONS_00001006 | mRNA | downstream | 102726 | 45958904 ~ 46020725 (+) | False | XLOC_000577 |
| TCONS_00001007 | mRNA | downstream | 113062 | 45969240 ~ 46020710 (+) | True | XLOC_000577 |
| TCONS_00000997 | other | upstream | 71418 | 45768416 ~ 45768530 (+) | True | XLOC_000573 |
| TCONS_00000982 | other | upstream | 669296 | 45170046 ~ 45170652 (+) | True | XLOC_000563 |
| TCONS_00000975 | other | upstream | 830332 | 45007403 ~ 45009616 (+) | True | XLOC_000559 |
| TCONS_00000971 | other | upstream | 842178 | 44986996 ~ 44997770 (+) | False | XLOC_000558 |
| TCONS_00000970 | other | upstream | 850402 | 44983825 ~ 44989546 (+) | False | XLOC_000558 |
| TCONS_00001013 | other | downstream | 544434 | 46400612 ~ 46401636 (+) | True | XLOC_000586 |
| TCONS_00001019 | other | downstream | 726289 | 46582467 ~ 46586602 (+) | True | XLOC_000588 |
| TCONS_00001025 | other | downstream | 1233323 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001027 | other | downstream | 1239647 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
| TCONS_00001046 | other | downstream | 2041091 | 47897269 ~ 47897385 (+) | True | XLOC_000608 |
