RNA id: TCONS_00000995


Basic Information

Item Value
RNA id TCONS_00000995
length 3872
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_000571
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45707219 ~ 45744854 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACCACCTTCCTCTCAACTCCCTACCACCCAGAGGAGGAAAAACAAGATTTGACCCCATCAACCTTCTGGATCTCACCCTCTGTCAAGAAAGGAACTTTCCACCACAGCCAAATGACTTGCTTTCCATCCAAATGACAATGTCCTCCAAACTTCGTCTCCGACCACGTGCTTCCCATGTGCCTCAGGCACCACGGCTTCCCACTGACCTGCCTCCCAGAATACCAAATGCAGTGTCAAACACTCAGCTGCGCTGTCTAGAGCAACACCAACAGCACCTTCATGAGATCCAGCAAAGACAGGAAAAACGTAGTCGAGAGCAAGAGAGACAAGCAAAAGAGGAGATGCAAGTGAGAAAAGGGAagcaggaggaagaggaggaggaggaggaggaggaacagAGACGAAATCTGCTCGAGTTGAAACTTAAACAGCAAGAGCAAGAACTGAAGCAGCGACAGCAGATCATGCAGTGGCAACAAGAACTTGaagaacaacagcagcagcagcagcagcaaaaaCACAAGGTGCATACACCTGTCATCCTATCTCCTTCAACAGGTCTCACTACAATCTATGAAACTTTGGAAACGAGTGACTCTGAAGATGGCGAAGAGGAGGGGAAACAAAGTGTGGTGGAGGAACTGCAAGATAAAAGCTCCTTTATTGTGTTTCCTGGAGAAGACACTCAAAGATGCACAGACAAAAATGTCTCTGCTAATCCTTACACAACACCTTCCCCAGAGTCTGCTACTCAAGACTCGCAGCAAGAACTTAAGGAAACTGACACAGCCACAGACCAGGACAGTCCTTCATTGGGATCACCAGAACGACCTCCACCTCTGGAGTTTGACTGGGGAAAGAAGGTGGACATTGTCCAGCAGCTCATCAACCAGACTTTATTGCTTACAGGTGATGGATGCTCCCCGCTTCTTTTGCTACCCGGAAGAGCCGGTGGGACACTCAGCCCTCTCGAAAGCAGCATGTGGCCCAACTTGCTGCCACCTCTGACGCCCCCATCAGCCACCGTGACCTCTGTGAGCAGCTTCTCACCTGAGGCTCCCGGCAGCTCTGCACAGGGTGAGTGGACTGTTGTAGAGCTGGAGACTCACCACTAAGCGACTTGCCAAATATAAACTTCTTGATTCAAAAGACTTAAAGTGAAGGTCCACCAGTAGGGAAGTGCAAGTTTCATTATATCAGGGGTGTCACTCCCCGCAACCCAGCACAGTTTAGGTTCAACACCCTCACCCgtgggttttaaacaagcctaaaggactccattagattgatcaggtgtgtttaattagttccTGGAGTGCCGCAGGTCTGCACAGCTTGATTCCAACCCTGAGTTTGACAACTGAGCATTAGGTAATGGTGTCTTCTCTTCACAAAATCTTAAGGAGGATGGTGATCATGGAGTACTTCTAGTATCTGCAATATTTCTGCAAAGTAGAAAATTCTGTGAACCATAAAAGTGATACTGCAGGACAGTGAGCTGGACTTCTCTAAGAtcttgctttttatttgattcaTCTTTACTGGGAGTTCTTCTGTTGCAGTGAGCTTTTACTGCCACTCCCCACCCATCCTAAAGCAATAGAACACAACAGTCCTTATTTATGTCCCTGATAAAGCCTCCCTGCCAAACTGATTGGCCATATCTAACCTGCCCCCATGCAAAAAATCCATTTAAGGCTTAAGGTTTAATGGAGATGTCTGGCTGGCTATGACTATTTGCATTTATCTCTTAGTCATTAATAAGCCCTCTACCCACAATTGTGGCAAAATGCCAACTCAGTGACTGAGCAAGTTAATACAAAGTGGACTCTGCTGTTCTTCCTCAGAGTAAAGGTTCTGTGAAATGGATACAGATCCAAGGTAAATTAAAACGAGCAGGTTTCAAAATACAGATCAAGCTGTGTTTTTGTTGTACTAAGGTGGTTTTAAAAGACCAAATGGTTTAATTTGACACTCATTCTATTGTAAGGCACAAAATGGTGTAACAGAAGAATATATTTTatggtttaaaacatttttcagtcTGTATCTAAGCTTAGTTTGTTATTTCTACAGCTCCAATCTACAGAAACCTGTATTACAGTTTTCCAAAGCACAAATAGCTACTCACTTTTAAACCTTTTAAgagtttggtttaaaaaaaaaagtataaataaaacattttgcacATCTGTATCATCTGAGAAATAGCTGACATCAGAACCTGCGCCATTTTAGGATGCAGGTTCGTTAGAAATATTTTAGACTACAGGTTTTcaatccagttcctggagagccccagctctgcacagtttagttccaaccctgcttcaacacacttacctgtaggtttcaaacaagcctgaaggactcgagtttcatcaggtgtgtttaattagggtttaaactaaaccgtgcagagctgcggccatccaggaactaagtttgacacctgtgttttagACGGACATACTGCAGCTACATCAAATGATCATCTTTACTGTGAACCTTTTGAACACTGTGCCTCCCTTACCTTTCTGCATGATTAGTATTTATCTGAGGAATACGGAGCAGCTCTTATCGCCACACTCATGCAGTTCGAATGAGGTTTGCTGTGCCTGAGATTGATTCCCATATTTCGAGAGCTGGAAAAACTTTCTGCTGAATGAGCACTCTCTTACACTGTGTCACAATAGTCGTCTACCAAGTGTTTACTTTCCCCAGTTGGGGACAAATTGTTTCATCTCATTTAGTATGGATGGGGAAATTGTCTTTATGTGCTCCGCATTGTTCTGTCTCTCTTCTGAAAGTCTAAATTATCGGGATAAGTAATTCCAGAGGAAGGCCCTAATGTGTTTATTTAGCTTAATAACATATGCCTAATGATatacatgaatgaatatttgtgtgtgagagtttgtctcCTATCtgaaagtgaaaattggttattAGAGCTTCATTCGCCTCTATTATATGTTGTTGTGTGTAAAATGACATGTATTATTTTAAAGGGATCatgtttaaagtttattattattatgaagtgAGAAAACCATTTTGATTCGATGTGTGTTGTACTGCCTACTCGTGTATTGTTGTGACATAGCAGACTTTTAGATATGTAGCTTGACACTGTAAAGATAGgagcatttatttaaatgaaaggTTTTAGGATATATTAAAGAAACCGATTTCAATTCTGATCAGGGAACAAAGGGattccaggtaaaaaaaaaattcactgtaTTATGACTGAACTACTGTTGTACAAACTTGACATATCACAGTTAAAAAGAACATGCAGGGGAAGCCATATTATAGCTTCACAAACCAGCAGAGtacaaaaatatatcaaataatgcACTGAAAATAACTTTAAACTCAGAACTGGGATGATTTACAAAAGGAATAGTGAAGGAAAACAACAACGTTGTTCATAATGCTCTGACCTCTACATTGAACTTTATCATAATGTTTTCCAGCAAGTGTGCAGATACTGCTGCTTTTGTTTAGTACATCTTTTCCCACCTTCattgtgtatatttttgtaatttattattttgaaatgaAGGAttattctgttgttgttttttttatatagagaAAAGTAGGCAGTGGACCAAAGCTGCCAGCAGGTTTCGTTTCTGGACTTTGTAACAGATTACCTGGATGGCCACTGTATTTGAATGTTTTCATGAAAAATAAAGCTGGTTTGGAATTAAATCTTGAGTATTTTCTGTGTAATGAACATTTCACTTAGCTGTTTAACATGCAAACAAGGCAGAAGAACTCTAACAATAACAGCCATGAGGTTTAAAAATCTAACTTTGGTACACGCTGGATCGACACTTCAGATTTATGTTAAGTCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6275 Orthologous to human PRR36 (proline rich 36).

Ensembl:

ensembl_id ENSDART00000149116

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003123 lncRNA upstream 91937 45644766 ~ 45648246 (+) True XLOC_000568
TCONS_00003122 lncRNA upstream 341362 45383604 ~ 45398821 (+) True XLOC_000567
TCONS_00000974 lncRNA upstream 731210 45004906 ~ 45008973 (+) False XLOC_000559
TCONS_00000969 lncRNA upstream 767257 44970569 ~ 44972926 (+) True XLOC_000557
TCONS_00000968 lncRNA upstream 768943 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00003124 lncRNA downstream 122186 45867040 ~ 45869497 (+) False XLOC_000575
TCONS_00003125 lncRNA downstream 122203 45867057 ~ 45869497 (+) True XLOC_000575
TCONS_00003126 lncRNA downstream 287866 46032720 ~ 46040123 (+) False XLOC_000579
TCONS_00003127 lncRNA downstream 287866 46032720 ~ 46061493 (+) False XLOC_000579
TCONS_00003128 lncRNA downstream 287897 46032751 ~ 46040123 (+) False XLOC_000579
TCONS_00000993 mRNA upstream 39609 45671687 ~ 45700574 (+) True XLOC_000570
TCONS_00000990 mRNA upstream 70739 45663727 ~ 45669444 (+) False XLOC_000569
TCONS_00000992 mRNA upstream 71148 45663807 ~ 45669035 (+) True XLOC_000569
TCONS_00000991 mRNA upstream 71179 45663770 ~ 45669004 (+) False XLOC_000569
TCONS_00000989 mRNA upstream 373761 45351890 ~ 45366422 (+) True XLOC_000566
TCONS_00000996 mRNA downstream 10014 45754868 ~ 45832984 (+) False XLOC_000572
TCONS_00000998 mRNA downstream 39032 45783886 ~ 45836167 (+) True XLOC_000572
TCONS_00000999 mRNA downstream 95073 45839927 ~ 45856178 (+) False XLOC_000574
TCONS_00001002 mRNA downstream 95094 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00001001 mRNA downstream 95094 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00000982 other upstream 569531 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 730567 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 742413 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 750637 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000949 other upstream 970128 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000997 other downstream 23562 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00001013 other downstream 655758 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 837613 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 1344647 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 1350971 47095825 ~ 47101796 (+) True XLOC_000596

Expression Profile

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